RNA id: TU17741


Basic Information

Item Value
RNA id TU17741
length 268
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G15877
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5196661 ~ 5196928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATATATTGCCACTTATTTGTGCTTATCCATGAAGCTTGGCAAAAAATAATGAATGCTGCTTATTAAATAATGATTTATAATAACGGTATGCGTTGTATATAATAATAATAATTGTATATTTCACAAAATAATATTTTATCTATGACTGCAGCCATGGTTATATATGCATTATGCACTGTATTAGTAAAGATAATGCAAGGTAATAGCAATGTATTGACTACAATAGCCTCTTGAATTAATTAAAAAAATATTAATATGTATCCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17739 lncRNA upstream 13301 5183072 ~ 5183360 (+) True G15875
TU17656 lncRNA upstream 116678 5079936 ~ 5079983 (+) True G15797
TU17654 lncRNA upstream 120175 5074401 ~ 5074805 (+) False G15796
TU17655 lncRNA upstream 120175 5074401 ~ 5074805 (+) True G15796
TU17676 lncRNA upstream 135479 5060807 ~ 5061182 (+) True G15817
TU17742 lncRNA downstream 97 5197025 ~ 5197241 (+) True G15878
TU17743 lncRNA downstream 618 5197546 ~ 5197755 (+) True G15879
TU17709 lncRNA downstream 15341 5212269 ~ 5214252 (+) True G15846
TU17759 lncRNA downstream 86532 5283460 ~ 5283723 (+) True G15895
TU17702 lncRNA downstream 120558 5317486 ~ 5317900 (+) False G15839
CI01000001_05075984_05079729.mRNA mRNA upstream 116930 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 120908 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 136721 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_04993860_04998535.mRNA mRNA upstream 197900 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_04976994_04988795.mRNA mRNA upstream 207579 4976347 ~ 4989082 (+) True CI01000001_04976994_04988795
CI01000001_05223340_05229184.mRNA mRNA downstream 26412 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05270301_05279405.mRNA mRNA downstream 73373 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05279884_05287123.mRNA mRNA downstream 82909 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05365373_05384192.mRNA mRNA downstream 168234 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 204737 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
TU17650 other upstream 131957 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 132732 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1575210 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3525657 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4151509 1043713 ~ 1045152 (+) True G13051
TU17699 other downstream 89821 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 514957 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2335644 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2335712 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2335836 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781

Expression Profile