RNA id: TU17759


Basic Information

Item Value
RNA id TU17759
length 264
lncRNA type intronic
GC content 0.52
exon number 1
gene id G15895
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5283460 ~ 5283723 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTTTCTTAATTTTAATTTTTGTGATGGCAAAGCTGAATTTTCAGATCCTTTAGAAATCATTCAAATATGCTGATTTGGTGCATAATGATTTCTTATTATTATGCTGAAAACAGCTGTGATGCTTAATATTTTTGTATTTTTTTTTTTAATATTTTAATATTTTTTCAGGATGTTTTGATGAATACAAGCAAAAGAGAACAGCATTTATTTAAAACGTGACCCAGGTCGGTGCCGATAGCCTAGTGGTTAGCGTACCAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17709 lncRNA upstream 69208 5212269 ~ 5214252 (+) True G15846
TU17743 lncRNA upstream 85705 5197546 ~ 5197755 (+) True G15879
TU17742 lncRNA upstream 86219 5197025 ~ 5197241 (+) True G15878
TU17741 lncRNA upstream 86532 5196661 ~ 5196928 (+) True G15877
TU17739 lncRNA upstream 100100 5183072 ~ 5183360 (+) True G15875
TU17702 lncRNA downstream 33763 5317486 ~ 5317900 (+) False G15839
TU17700 lncRNA downstream 33802 5317525 ~ 5317993 (+) False G15839
TU17701 lncRNA downstream 33802 5317525 ~ 5317900 (+) True G15839
TU17718 lncRNA downstream 53397 5337120 ~ 5341892 (+) True G15854
TU17776 lncRNA downstream 73907 5357630 ~ 5357902 (+) True G15911
CI01000001_05270301_05279405.mRNA mRNA upstream 2653 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05223340_05229184.mRNA mRNA upstream 53801 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05075984_05079729.mRNA mRNA upstream 203729 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 207707 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 223520 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_05365373_05384192.mRNA mRNA downstream 81439 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 117942 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
CI01000001_05427300_05427801.mRNA mRNA downstream 143509 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05478200_05480124.mRNA mRNA downstream 194477 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05487409_05494726.mRNA mRNA downstream 203579 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
TU17650 other upstream 218756 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 219531 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1662009 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3612456 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4238308 1043713 ~ 1045152 (+) True G13051
TU17699 other downstream 3026 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 428162 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2248849 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2248917 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2249041 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781

Expression Profile