RNA id: TU17739


Basic Information

Item Value
RNA id TU17739
length 289
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G15875
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5183072 ~ 5183360 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGATTACAAATATGAATTACTGAGAATTATTAAACAATTGTTTTCTATTCAAATACAGTTTAAGATGTAATTTATTCCTGTGACGGCAAAGCTGATTTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTTTAATATGCTGATTTGATGCTCAAGAAACATTTCTTGTTACTATAAATGATGAAAACAGTTGTGCTGCTTAATATTTTTGTGGAAATGGTGATATTTTTCAAGATTCTTTGACGAATAGAAATTTCAATAGAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17656 lncRNA upstream 103089 5079936 ~ 5079983 (+) True G15797
TU17654 lncRNA upstream 106586 5074401 ~ 5074805 (+) False G15796
TU17655 lncRNA upstream 106586 5074401 ~ 5074805 (+) True G15796
TU17676 lncRNA upstream 121890 5060807 ~ 5061182 (+) True G15817
TU17671 lncRNA upstream 141507 5041366 ~ 5041565 (+) True G15812
TU17741 lncRNA downstream 13301 5196661 ~ 5196928 (+) True G15877
TU17742 lncRNA downstream 13665 5197025 ~ 5197241 (+) True G15878
TU17743 lncRNA downstream 14186 5197546 ~ 5197755 (+) True G15879
TU17709 lncRNA downstream 28909 5212269 ~ 5214252 (+) True G15846
TU17759 lncRNA downstream 100100 5283460 ~ 5283723 (+) True G15895
CI01000001_05075984_05079729.mRNA mRNA upstream 103341 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 107319 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 123132 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_04993860_04998535.mRNA mRNA upstream 184311 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_04976994_04988795.mRNA mRNA upstream 193990 4976347 ~ 4989082 (+) True CI01000001_04976994_04988795
CI01000001_05223340_05229184.mRNA mRNA downstream 39980 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05270301_05279405.mRNA mRNA downstream 86941 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05279884_05287123.mRNA mRNA downstream 96477 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05365373_05384192.mRNA mRNA downstream 181802 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 218305 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
TU17650 other upstream 118368 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 119143 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1561621 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3512068 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4137920 1043713 ~ 1045152 (+) True G13051
TU17699 other downstream 103389 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 528525 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2349212 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2349280 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2349404 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781

Expression Profile