RNA id: TU17676


Basic Information

Item Value
RNA id TU17676
length 376
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G15817
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5060807 ~ 5061182 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTTTCCCATTTAAATGACTGGATTTTGCCCATGAAAATTCGTCGAAAGGTAAATATAAGCACACTTTAAAAAAAGGGAAAAAAGGTAGTGTACCTTTGTATAAAGCGCAGCTCACACAGAAGTCTCTTTCAAACCAAGCAGTTTTCTGATGGTCAGCGCTGTAGATTTGTGTGAGGAAATCTTTGCCCTCACGCAAAAATCCAGATTGAACGAATTCCTATGGAAATGACTGGATTTTTCCCGCGGTAAATGTGACCGTACCCTATACCAGTATTTTGCTTGAGATGACATCGAATTATGCACTGCTGAGAAATCCTCTAAGAATGTTAGAGGTCATTGCCACACTTTTATAATTAAAATAACACATCTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17671 lncRNA upstream 19242 5041366 ~ 5041565 (+) True G15812
TU17659 lncRNA upstream 54770 5005822 ~ 5006037 (+) True G15800
TU17657 lncRNA upstream 57417 5003170 ~ 5003390 (+) True G15798
TU17642 lncRNA upstream 124817 4935371 ~ 4935990 (+) True G15789
TU17240 lncRNA upstream 259277 4800973 ~ 4801530 (+) True G15419
TU17654 lncRNA downstream 9290 5074401 ~ 5074805 (+) False G15796
TU17655 lncRNA downstream 9290 5074401 ~ 5074805 (+) True G15796
TU17656 lncRNA downstream 17576 5079936 ~ 5079983 (+) True G15797
TU17739 lncRNA downstream 121890 5183072 ~ 5183360 (+) True G15875
TU17741 lncRNA downstream 135479 5196661 ~ 5196928 (+) True G15877
CI01000001_05051664_05059659.mRNA mRNA upstream 867 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_04993860_04998535.mRNA mRNA upstream 62046 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_04976994_04988795.mRNA mRNA upstream 71725 4976347 ~ 4989082 (+) True CI01000001_04976994_04988795
CI01000001_04962494_04971921.mRNA mRNA upstream 88576 4962494 ~ 4972231 (+) True CI01000001_04962494_04971921
CI01000001_04950531_04960550.mRNA mRNA upstream 100112 4950531 ~ 4960695 (+) True CI01000001_04950531_04960550
CI01000001_05071017_05075175.mRNA mRNA downstream 8121 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05075984_05079729.mRNA mRNA downstream 14802 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05223340_05229184.mRNA mRNA downstream 162158 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05270301_05279405.mRNA mRNA downstream 209119 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05279884_05287123.mRNA mRNA downstream 218655 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
TU16602 other upstream 1439356 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3389803 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4015655 1043713 ~ 1045152 (+) True G13051
TU14049 other upstream 4568750 490574 ~ 492057 (+) True G12653
TU14066 other upstream 4576397 478386 ~ 478781 (+) True G12670
TU17650 other downstream 36 5061218 ~ 5064704 (+) False G15794
TU17651 other downstream 36 5061218 ~ 5063929 (+) True G15794
TU17699 other downstream 225567 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 650703 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2471390 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781

Expression Profile