RNA id: TU17742


Basic Information

Item Value
RNA id TU17742
length 217
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G15878
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5197025 ~ 5197241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCCAAAACACATCTACCATCTTAAACTGGATTTTCCAGCAGGGATATGATTCCCAAACGTTCACATATCAGAAGTTCACATATCAAAATCTCTGCATCAAAATAAACTGAATGTCCACATGGTCTATTATCATTATTACTGCAAACCATCCATACTAGCTCAGTACTTCTGTCTTAGTAATCAACAGCTGGCAGAGGCTTGATAATGCATGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17741 lncRNA upstream 97 5196661 ~ 5196928 (+) True G15877
TU17739 lncRNA upstream 13665 5183072 ~ 5183360 (+) True G15875
TU17656 lncRNA upstream 117042 5079936 ~ 5079983 (+) True G15797
TU17654 lncRNA upstream 120539 5074401 ~ 5074805 (+) False G15796
TU17655 lncRNA upstream 120539 5074401 ~ 5074805 (+) True G15796
TU17743 lncRNA downstream 305 5197546 ~ 5197755 (+) True G15879
TU17709 lncRNA downstream 15028 5212269 ~ 5214252 (+) True G15846
TU17759 lncRNA downstream 86219 5283460 ~ 5283723 (+) True G15895
TU17702 lncRNA downstream 120245 5317486 ~ 5317900 (+) False G15839
TU17700 lncRNA downstream 120284 5317525 ~ 5317993 (+) False G15839
CI01000001_05075984_05079729.mRNA mRNA upstream 117294 5075984 ~ 5079731 (+) False CI01000001_05075984_05079729
CI01000001_05071017_05075175.mRNA mRNA upstream 121272 5069303 ~ 5075753 (+) False CI01000001_05071017_05075175
CI01000001_05051664_05059659.mRNA mRNA upstream 137085 5051529 ~ 5059940 (+) True CI01000001_05051664_05059659
CI01000001_04993860_04998535.mRNA mRNA upstream 198264 4993860 ~ 4998761 (+) True CI01000001_04993860_04998535
CI01000001_04976994_04988795.mRNA mRNA upstream 207943 4976347 ~ 4989082 (+) True CI01000001_04976994_04988795
CI01000001_05223340_05229184.mRNA mRNA downstream 26099 5223340 ~ 5229659 (+) True CI01000001_05223340_05229184
CI01000001_05270301_05279405.mRNA mRNA downstream 73060 5270301 ~ 5280807 (+) True CI01000001_05270301_05279405
CI01000001_05279884_05287123.mRNA mRNA downstream 82596 5279837 ~ 5287379 (+) False CI01000001_05279884_05287123
CI01000001_05365373_05384192.mRNA mRNA downstream 167921 5365162 ~ 5384238 (+) True CI01000001_05365373_05384192
CI01000001_05401665_05402500.mRNA mRNA downstream 204424 5401665 ~ 5402771 (+) True CI01000001_05401665_05402500
TU17650 other upstream 132321 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 133096 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1575574 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3526021 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU14532 other upstream 4151873 1043713 ~ 1045152 (+) True G13051
TU17699 other downstream 89508 5289881 ~ 5289956 (+) True G15838
TU17891 other downstream 514644 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 2335331 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 2335399 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 2335523 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781

Expression Profile