RNA id: TU33179


Basic Information

Item Value
RNA id TU33179
length 2223
lncRNA type read_through
GC content 0.40
exon number 7
gene id G29315
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6772523 ~ 6841575 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGTTCTATATGCCTGCATAAACATTCGGGTTGGTGCATTCCTCACATACGTTGTGGTTCATGTATTATCTAATTATTTCACTTTAACTCATTTTCTAAACTAAAAGATAAACATTTATGGCAAGAAAATAGCTAAATATACTTATTCTTTTTTATCATAAACATACGCTTTATTCGTATGCAAACAAACACAAAGCCAGTCCCGTTGTATAAAAACTACACACAAACAAACTGAGTTTAGAAGGTTTTATTATATTTTTCGTGATAGCATTTCATTTTGAGAACACAGCAAATAAAGTTGAGGGTCACAAAGTTACTCCAGGTTTGGCTTTATCACACCCCTTTCACAACAGACAAGATGTTCACCGTATATCTATTAACAACATAGTGCCAAGAGAAAGCAAGTCTTTACACAATCACTCAGACACCTAAATTAATGTGGATCTGCACTGACTTTACACAGCGGACTGCATTGGAGAAAATTAATTTTGAAGAAAGGAAAAACAATAGATATATTTATATGCATACAAATGCATGCATATGTGACGACTTGTATGGATATATAAGTACAGGCATGTATGCGTGAGTGTCTGTCTAATGGATAAGTGAGTCTAGCGTTATCATATGCAATATACGATTGCACGTAATGACTGAAATGATCCTGTGTAACATGAATATGTTATTGTTTCGACGTCCCAAAATCTTTTAAGGCAAACAGCAGATCTAGTTCTGGAGGTGATCCATATCTGGAGCCATGATTTTAGAACACAGGTAAACACAAATTTGGCATTAAAATAGGTATATAGAGCCAGAGTTTCTATACAGAGAGGAGGATCGGGTGCACGTATACGAGGGGTCAAGGCAGATGGCAGGACCAAACTAAAATAAATGAAGTAAAAGATTACCTTAAAATGGTGTCAAAGCGGTTTTGGAAATATCGCAATACTGTTGCAGTTTCAAGCTCTATTCATACAGTATAGAATTTAAGCAAATTCAGTACAGAATTCTAGCTCGGTCAACGTACACCAAAGCAAGAAATGATAACTATATATACAGAATGTGAATGATAAATACAGATTTAAAACAGTCCTGCTTTTTTTCTTCTTTTAACTTCTTCACTTTGATAACAGCTGTTCCTTTTTTTTTTTTTAGACCAGCTCTACGTTCCTTTTATTTTGACTTCAGGGTTCACCACAGTTTTCATTGAATTCACCCACATAAACTGATTAAAATACTATAGATGACTTTGTAGTGTTTAATACAGTTCAGCTTGAAGTCAAATGGGCAAAAACAAAACAAAAAACAAACAAAAAAACAATTTGCTGAGAAACAAACATGAATATATTTACCATAATAACTCCAAAGCTCCTGCCTTTTTCCTTACTAGTAACCATATAATGTCTTCTGTAGCCCAAACAGGCTTCAGGAGTTGTCAGGAGGTTTGAAGAGGACCTGGACTTTATAAATATTTTTTTTTTGTTTTGTTTTGGACAGCCATCTAATATATGATTTGAATCCGGGGTCTGGGCTGTGGGAGGTTAAGAAAATGTTAGTGAGCCCGACCAGTCCAGTAGAAACGTAAGGGGCGGAGGGGGACGTGGAGGAGACTGGAGGGTAAAGGGTAGTGCTCAGCAACAGCCCCCTCCGGCTTGCTGTCCTCCCTGACTGCCGCCCATCGTGGAGTTGGTGGCAGCATGCTGGGGTCCAATTTTAATGCCGTTAGCCTCATTGTTTATATCAAAGACTCCCTCCTGGATCTTTTCATAAATCTCCTTGGCCGTATTGATAAATGCCTCTTCTACGTTTGATGCAGTCTTTGCAGAAGTCTCCATGAAGATCAGTCCATGTTCTCTGGCAAAGGCCTCTCCTTCCTCTTTCTTCACCTCTCTCCGTGACTCCAAATCACTTTTATTTCCAATGAGCATGATGACCATGTTAGAGTTGGAATGTTGACGAGCATCTTCTAACCAAGTTGTCAAGTGATTAAAAGTGTCCCTTCTTGTGATGTCATAAACTAGCAGAGCCCCAGCTGCACCTCTGTAGTAAGACCTGGTGATTGAACGGAAGGACTCCTGTCCGGCCGTATCCCAGATTTGAAGTTTTATCTGTTTGCCATCTATAGTGATCATTCGTGCTCCAAATTCAACACCGATAGTGAGATCGTGCACTGGCTGAAAGCGCTTATCTGTAAACTGTAATAATAGGCACGACTTCCCCACACCCGTGTCTCCGATTATGATGTATTTGAAGAGATACGCGTACGCCATGGCCAACCGGTCCTTTATCAACCTGCTCTGGCCTTACTAAAATGGCTCCTTGAAGCTAAAACCGCAGGGAAAGTGTGTGTGATATATGCCTCCGCTAAGCCAGCCCTTTTCTCCTCTCGACGGGAAGGAACAATAAACACCTCGAGCTCCAGCCGGTCTACGTCACACGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33287 lncRNA downstream 23361 6804003 ~ 6804387 (-) True G29411
TU33284 lncRNA downstream 32127 6795322 ~ 6795621 (-) True G29408
TU33278 lncRNA downstream 57165 6770362 ~ 6770583 (-) True G29402
TU33266 lncRNA downstream 171363 6655223 ~ 6656385 (-) True G29391
TU33262 lncRNA downstream 198278 6629066 ~ 6629470 (-) True G29387
TU33226 lncRNA upstream 30997 6872572 ~ 6875863 (-) True G29351
TU33310 lncRNA upstream 55446 6897021 ~ 6897255 (-) True G29433
TU33202 lncRNA upstream 116413 6957988 ~ 6958437 (-) True G29331
TU33320 lncRNA upstream 122558 6964133 ~ 6964337 (-) True G29441
TU33334 lncRNA upstream 135811 6977386 ~ 6977609 (-) True G29451
CI01000004_06805399_06814604.mRNA mRNA downstream 13144 6805217 ~ 6814604 (-) True CI01000004_06805399_06814604
CI01000004_06677179_06740196.mRNA mRNA downstream 87552 6677179 ~ 6740196 (-) True CI01000004_06677179_06740196
CI01000004_06569673_06570071.mRNA mRNA downstream 257577 6569596 ~ 6570171 (-) True CI01000004_06569673_06570071
CI01000004_06555703_06558890.mRNA mRNA downstream 268858 6555477 ~ 6558890 (-) True CI01000004_06555703_06558890
CI01000004_06547877_06549227.mRNA mRNA downstream 278521 6547390 ~ 6549227 (-) True CI01000004_06547877_06549227
CI01000004_06915152_06921193.mRNA mRNA upstream 73014 6914589 ~ 6921193 (-) True CI01000004_06915152_06921193
CI01000004_06960750_06963258.mRNA mRNA upstream 119100 6960675 ~ 6963282 (-) False CI01000004_06960750_06963258
CI01000004_07008022_07016495.mRNA mRNA upstream 166253 7007828 ~ 7017478 (-) True CI01000004_07008022_07016495
CI01000004_07024832_07032532.mRNA mRNA upstream 182118 7023693 ~ 7033161 (-) True CI01000004_07024832_07032532
CI01000004_07055639_07067152.mRNA mRNA upstream 213835 7055410 ~ 7067152 (-) True CI01000004_07055639_07067152
TU33263 other downstream 195841 6631293 ~ 6631907 (-) True G29388
TU33056 other downstream 282176 6534827 ~ 6545572 (-) True G29204
TU31692 other downstream 1200234 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU31341 other downstream 1624024 5178227 ~ 5203724 (-) False G27746
TU33567 other upstream 1122789 7964364 ~ 7965500 (-) True G29656
TU33669 other upstream 1512923 8354498 ~ 8358127 (-) False G29746
TU33670 other upstream 1512923 8354498 ~ 8358127 (-) True G29746
TU34309 other upstream 2536362 9377937 ~ 9406921 (-) True G30316
TU35313 other upstream 3904862 10746437 ~ 10750641 (-) True G31203

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032166 False 2297 mRNA 0.42 8 NC_007113.7 21821683 ~ 21847935 (-)
bowfin (Amia calva) AMCG00019389 True 2191 mRNA 0.38 8 CM030124.1 18179249 ~ 18207126 (+)