RNA id: TU30103


Basic Information

Item Value
RNA id TU30103
length 340
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26690
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2965251 ~ 2965590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGGACATAAACACGGAAATGCAGCATTGCACCAACTGCATAACAGACTGACAAGAGAAGAGGAAAAATTGTTGAATAAAGTTGTTATTTTTTGTGTCGCTTCATAACATTAAGGTTGAACCACTGTAATCACGTTGACTATTTTAATGATGTCTTTACAACTTTTCTAAATACTGAATGTGGTAGTTTCATTGCTTTCAATGAAGGATTAAAAAAAAACCTCTCGGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACAGGTGTTACGCAGTTGGCGTAGTGCTGATTTTCCTTGAGTCCGAACGCCGGCTCATTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30102 lncRNA downstream 72 2964897 ~ 2965179 (-) True G26689
TU30085 lncRNA downstream 26770 2938004 ~ 2938481 (-) True G26673
TU30069 lncRNA downstream 56945 2906287 ~ 2908306 (-) True G26658
TU30064 lncRNA downstream 72951 2891828 ~ 2892300 (-) True G26656
TU30038 lncRNA downstream 229422 2735595 ~ 2735829 (-) True G26636
TU30104 lncRNA upstream 110 2965700 ~ 2966985 (-) True G26691
TU30132 lncRNA upstream 54571 3020161 ~ 3068533 (-) True G26714
TU30172 lncRNA upstream 151196 3116786 ~ 3117281 (-) True G26751
TU30173 lncRNA upstream 154360 3119950 ~ 3122260 (-) False G26752
TU30174 lncRNA upstream 154360 3119950 ~ 3121476 (-) False G26752
CI01000004_02953160_02955378.mRNA mRNA downstream 9761 2953146 ~ 2955490 (-) True CI01000004_02953160_02955378
CI01000004_02834634_02863535.mRNA mRNA downstream 101653 2832744 ~ 2863598 (-) True CI01000004_02834634_02863535
CI01000004_02812936_02825192.mRNA mRNA downstream 140059 2812853 ~ 2825192 (-) True CI01000004_02812936_02825192
CI01000004_02777722_02810321.mRNA mRNA downstream 154930 2777722 ~ 2810321 (-) True CI01000004_02777722_02810321
CI01000004_02664483_02667653.mRNA mRNA downstream 297598 2664483 ~ 2667653 (-) True CI01000004_02664483_02667653
CI01000004_03070803_03073454.mRNA mRNA upstream 105026 3070616 ~ 3073481 (-) True CI01000004_03070803_03073454
CI01000004_03106070_03109051.mRNA mRNA upstream 140452 3106042 ~ 3109051 (-) True CI01000004_03106070_03109051
CI01000004_03133701_03141953.mRNA mRNA upstream 168084 3133674 ~ 3141979 (-) True CI01000004_03133701_03141953
CI01000004_03187077_03196194.mRNA mRNA upstream 221487 3187077 ~ 3196198 (-) True CI01000004_03187077_03196194
CI01000004_03204599_03205569.mRNA mRNA upstream 238982 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
TU29027 other downstream 1190310 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 308843 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 2212637 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 2214403 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2654793 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3569237 6534827 ~ 6545572 (-) True G29204

Expression Profile