RNA id: TU30172


Basic Information

Item Value
RNA id TU30172
length 496
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G26751
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3116786 ~ 3117281 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACACACCAAACAGGAAGAGGGGCAGAGTGACGACAGCTGAACTCGAGATATTGTCAGCATCAGTAGAAGGCAGATACCTGAGAGGAACAATTAGTATAGTGTTCACATAATGTTAGTCGGATTTTTCCTGACCTCATTTTGAAGAATCAGCGCTGACTACTTGAAACACTATGCACATACTTCTCATGATTTGCCATTGAAGTCAGATTGAAGCCAGTGTTGGACTTCCAAAATGGCTTATGTGGTCCATGGCCTTCGATCAGCTTTGTTCAGGTCACAACGTTTATACCAAATCCTCAAAAACAAGGCAAAAAGCAATAGCCCATCAACAAAAGCACAACAGTTCTTCAGTCAAAATCTATATTCAGTCAACATTCCCAACTCACTAGTACTTCTCCTGTGTTTTTCTTCTGTTTTGGCAACTGCACCTGATGCTGCGCTCCTCTGACCTCTGTTGCCTGGAGACGCTGACTGGCAGACAGATGAGGAAGGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30132 lncRNA downstream 48253 3020161 ~ 3068533 (-) True G26714
TU30104 lncRNA downstream 149801 2965700 ~ 2966985 (-) True G26691
TU30103 lncRNA downstream 151196 2965251 ~ 2965590 (-) True G26690
TU30102 lncRNA downstream 151607 2964897 ~ 2965179 (-) True G26689
TU30085 lncRNA downstream 178305 2938004 ~ 2938481 (-) True G26673
TU30173 lncRNA upstream 2669 3119950 ~ 3122260 (-) False G26752
TU30174 lncRNA upstream 2669 3119950 ~ 3121476 (-) False G26752
TU30175 lncRNA upstream 4591 3121872 ~ 3122260 (-) True G26752
TU30165 lncRNA upstream 15275 3132556 ~ 3132765 (-) True G26744
TU30183 lncRNA upstream 55129 3172410 ~ 3179358 (-) False G26754
CI01000004_03106070_03109051.mRNA mRNA downstream 7735 3106042 ~ 3109051 (-) True CI01000004_03106070_03109051
CI01000004_03070803_03073454.mRNA mRNA downstream 43305 3070616 ~ 3073481 (-) True CI01000004_03070803_03073454
CI01000004_02953160_02955378.mRNA mRNA downstream 161296 2953146 ~ 2955490 (-) True CI01000004_02953160_02955378
CI01000004_02834634_02863535.mRNA mRNA downstream 253188 2832744 ~ 2863598 (-) True CI01000004_02834634_02863535
CI01000004_02812936_02825192.mRNA mRNA downstream 291594 2812853 ~ 2825192 (-) True CI01000004_02812936_02825192
CI01000004_03133701_03141953.mRNA mRNA upstream 16393 3133674 ~ 3141979 (-) True CI01000004_03133701_03141953
CI01000004_03187077_03196194.mRNA mRNA upstream 69796 3187077 ~ 3196198 (-) True CI01000004_03187077_03196194
CI01000004_03204599_03205569.mRNA mRNA upstream 87291 3204572 ~ 3206068 (-) True CI01000004_03204599_03205569
CI01000004_03214098_03222707.mRNA mRNA upstream 96817 3214098 ~ 3222707 (-) True CI01000004_03214098_03222707
CI01000004_03238528_03240932.mRNA mRNA upstream 121077 3238358 ~ 3241491 (-) True CI01000004_03238528_03240932
TU29027 other downstream 1341845 1773040 ~ 1774941 (-) True CI01000004_01773383_01774888
TU30225 other upstream 157152 3274433 ~ 3275721 (-) True G26788
TU31341 other upstream 2060946 5178227 ~ 5203724 (-) False G27746
TU31343 other upstream 2062712 5179993 ~ 5195103 (-) True G27746
TU31692 other upstream 2503102 5620383 ~ 5627514 (-) True CI01000004_05617072_05627369
TU33056 other upstream 3417546 6534827 ~ 6545572 (-) True G29204

Expression Profile