RNA id: TCONS_00013505


Basic Information

Item Value
RNA id TCONS_00013505
length 880
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_006869
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 41866169 ~ 41869392 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctcactcccaactcgtcacatactgacgcttggtcagtaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattgataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatattttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCAGCTAAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTTCAGATCAGTGCTGA

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013879 lncRNA downstream 753552 41011832 ~ 41114062 (-) False XLOC_006864
TCONS_00013880 lncRNA downstream 753552 41029460 ~ 41114062 (-) True XLOC_006864
TCONS_00013502 lncRNA downstream 890204 40961735 ~ 40977410 (-) False XLOC_006863
TCONS_00013882 lncRNA upstream 119512 41988904 ~ 41992203 (-) True XLOC_006873
TCONS_00013883 lncRNA upstream 153401 42022793 ~ 42026479 (-) True XLOC_006874
TCONS_00013506 lncRNA upstream 161915 42031307 ~ 42045075 (-) True XLOC_006875
TCONS_00013885 lncRNA upstream 254470 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013884 lncRNA upstream 254470 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013197 mRNA downstream 320835 41170686 ~ 41546779 (-) False XLOC_006865
TCONS_00013196 mRNA downstream 385550 41125358 ~ 41482064 (-) False XLOC_006865
TCONS_00013198 mRNA downstream 385550 41171334 ~ 41482064 (-) True XLOC_006865
TCONS_00013195 mRNA downstream 712142 41124594 ~ 41155472 (-) False XLOC_006865
TCONS_00013193 mRNA downstream 1113115 40746281 ~ 40754499 (-) False XLOC_006862
TCONS_00013202 mRNA upstream 18183 41887575 ~ 41901225 (-) False XLOC_006870
TCONS_00013203 mRNA upstream 18192 41887584 ~ 41908583 (-) True XLOC_006870
TCONS_00013204 mRNA upstream 40950 41910342 ~ 41917050 (-) True XLOC_006871
TCONS_00013205 mRNA upstream 74746 41944138 ~ 41947996 (-) True XLOC_006872
TCONS_00013206 mRNA upstream 177378 42046770 ~ 42066299 (-) True XLOC_006876
TCONS_00013201 other downstream 22547 41844953 ~ 41845067 (-) True XLOC_006868
TCONS_00013200 other downstream 204526 41662972 ~ 41663088 (-) True XLOC_006867
TCONS_00013199 other downstream 637205 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013170 other downstream 2624942 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013167 other downstream 3014362 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013213 other upstream 656929 42526321 ~ 42536960 (-) True XLOC_006880
TCONS_00013216 other upstream 728368 42597760 ~ 42602408 (-) True XLOC_006883
TCONS_00013220 other upstream 756380 42625772 ~ 42672791 (-) False XLOC_006884
TCONS_00013227 other upstream 1041238 42910630 ~ 42910746 (-) True XLOC_006887
TCONS_00013236 other upstream 2218756 44088148 ~ 44088251 (-) True XLOC_006896

Expression Profile

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