RNA id: TCONS_00013883


Basic Information

Item Value
RNA id TCONS_00013883
length 3687
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id XLOC_006874
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 42022793 ~ 42026479 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataggtttaaaacaagtaaaggggaAGTAAATGACATAATTTTCCAACTGTTTAGGTAAAGGAGAGCATTTCTGTAATTTTATAAACATCTTTACTGGCAACTGAGTGCATCCTTGATGAAGATAAGAAAGGTAAACTCTTCATAAAGTATCCTCTGCTTCTTTTGTATTGTCCATTTTAACACTTATCTGTATGGAAGTATCATATAACAGGACAACGGTTAATCCTCAGGAACTGAAAACCCTCTCACAGTTTCTCATTACCTGATTTACTGTAAGTCTGTTCTTCTCTCGCATACAGCACAGGAATAATACCTGAAGGCCATGGACTGGATTCACGGAGGTCTCTTCAAGAGTTGTAGAACAGAGAGCATGCAAAAAGTGAATGTTGACGTTTATGTACAATAGAGGTTTTATGTAAAACAGAGAAGTTACTTCTGTATctgaaatgtaaatttaaatgtgtttgcaaAGCAGAAATGAACAGTTGATGCAACGAAAGTTCAAGTAGTAGGCAACTTATAAAGTCTTTGCGAAATCAAATGAAAAGTTAGTATCAATAAGTTATTCTAGAGCTAATCTTTAATCTAGTGGGCTTCGAAGCAGTGACAAAATTAGTGTTTTGAAGATATAAACAATCAAATCTTTAGGTTTATCACTTTCGGCTAAATGAatcacagattttattttttatttttgatgtcatCTTAAAATcctttgaccaatcaaatgctctctcgTATTTGATACATCCGCTCCCTTCAAATCTGAAATACCCATGTTGAAATCTGTTATTTATTCACATCAAAACTGCTCAAACTGAGGATTTGCctaaatataagaaaatatattgataataacacctaaaaaaaatgtatatttgattTCCCAGGGACTTTTATTCATATCAGGAAGATTAACAGTAACTAGGAGTGGCTTTATGACATCAGAAATATGTATGCCACTTTACtgacagctgattggtccagTTTTGCTTGGCAATCTCTAACTCAGAATAAATCTTACAATGGAGCAGGATAGCCATGTGGCTTAAGTTATTATAGTAATGAAACCAAAGTCCATTACAAGACAAATCTTTTTACTCTGCGACCATATTTGCAACGCCCCCGGGCAGTTCACCTAAGACCAAAAACCGATCTGAATGAATGGGGGAATCCTGAAATTTTCGAAAACCACTCGCTAAACTTGCAATTAAACTAAATATGTCAAATCAGCAACAAATTCTGAAGTGATCGTTAACATTACTGTTGTTGCTTAAACtccaattacattttaaacacaaaaacctCATGGCTTTAAAGCATGATTGGCTACTTCTTTCGCATCCATGCTAAGTATTGAACTTTCATTCAGTAATGCGAGTGAAGTATCAATATTTTTCAAAGTTATAactccaaggcactcgaaaaaaagtaagaaattatttgaaaagcctttattaacatggctattccattaaaactacaccaATGCGTTTTACCAAACACTTGCTTTCATCAGACCCTgatttattattttgctgtttatttttgtatcccttacccaaagagcaccaacACATTAATTACCCCTgtagcactttttgtttgattttggacatttacagtatatacagttcaATTCAGAATTCttagaccccctgaattattagccccctgtttattttaccccccaatttctgtttaatggagagattttttttaggCAAggtattatataatgatggtttgttctgtagactatcgaaaaaaataggttaaaggggctaataatttcgtccttgaaatggcttttaaaaaacttaaaactgcttttattctagctgaaataaaacaaataagacattctacAGAAAAGATATTTTCAGACTGGTTCAGAAGAGCAGCGAGACCAAACAGTAGATGATTGGGGGAAAAGGTTGCCTGATCTGAGCTTTGATTTCTGCCACAACTTTCAGAATTTGGTGTAAAAATAGGTAAGCTTGTACCCtgcctgccttgtattaacagttGAGGTTGAAAAACATTGGTggtgtaatgtttttatttgtattgaccttattcttcatgtaTGAACAGATGCAGCTTTTGAAATGTTTTAGGCTTGAGAGTTCCTGTATCGTTCACTTTCATttctttttagatgttaaaaacagcttgttatactgcctgatgttgcaaactgaaagatagatagatagatggatgggtggatggatggatggatggatgaatggatggatggatggatgagcacAGTATATTCATTTAATGATGGTCATCTCCAGCAGGATATCAGGCCATGTCACTAAGGTCAGataatctcaaactggtttcttaaaTGTGACAGTTCACTTCTCAAATggctccacagtcagcagatctcaatccagcaGAGCactggaatgggagattggcatcatacATGTGTACATGTTTAGTCGACAAATCTTCctcaactgcatgatgctatcatctcACAGACCATAATCTCTGTCAAAATAAGGCACTTCCGAAGGCAAAATAGGATCAATTCATTACTAacaaggtatacctaataaagtggctcttgaaaatataatttgattactaaacaaatagatttttttaatatagtagTGGAGGATGCTTAGTGTGATTATGTTGTTCCTGGAGCAACATTCCATTCAGCCAATCAGTTTTACAGGTTTACAGTTTGTTAAGTTTAAGCTTACACTTATGGTTATGTGCTTCTACTACATCGTTGTTATCCATCTATTAATCTTCACTGATTTTGGGAATGATTTACAGTTAGGTTTAGAGGTTAGGGTTTagatatggattacattttcgaacagTAATGATGTTCTAGGATCCACATGGATGTTAATGTACGTGTAGACGTTACAGATAAATCTAATGTATGATCCTTTTATACATTTTAGAAGAAAGTAATTAGAAATAAGAAATGTAGGATATTTGGAGCAGactaattctttatttttaaagctgAAAGGTGTGTGACATTCTGTTCTGTGCAAATTTGGCAAAATCACACCCATCTATGTACAGTAGATATGAAAACAAGAGGAATATAGATGACAACATCACAATACTAAAAGTTGAACATTtgaaataatctaatttaaactATAGTTCCTCAGTAATACTAAATATGCTAAAAACATTACATTGCATTAAGAAAGTAAAAAGTCTTTTAAACATTCTGCATTGTATTGTATCGTTGcctttattttgtactgctagtTTTCTCATCTGACTCTCATGTCTTTTATTTGGTTCTGTTGCAGTCTGACTGTTGGTTTTCCAGTAGTGAAGCgtattttcttttcttctgcAGGGTCTGGATGGGGAGCCGGCCGCTGTTGGTATCAATAATCAGCTGGTTTTATCTGCACTTGTCACGCACTCTGAGCTCGAATGGCTACAAACCTCAGGCTTGGTCAGAACAGGATGTGCTGGGAAAGCGAGATTAAGCACTTTGCAGGGAAGGGAATATCCTACACACTTTGCTTCTGTTTAAATGCCCTGTCTGCTTGCTGAGTGTCTTCTTGCCAATAATGCAATGGTGTTTTTATCTGTCACTATTTTACCAAATGTCAGTGAATGtgtaagctgatagaaaggcaacagtaactcaaataaccacttgttacaaccgaggtaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013882 lncRNA downstream 30590 41988904 ~ 41992203 (-) True XLOC_006873
TCONS_00013505 lncRNA downstream 153401 41867614 ~ 41869392 (-) True XLOC_006869
TCONS_00013881 lncRNA downstream 154962 41866169 ~ 41867831 (-) False XLOC_006869
TCONS_00013879 lncRNA downstream 908731 41011832 ~ 41114062 (-) False XLOC_006864
TCONS_00013880 lncRNA downstream 908731 41029460 ~ 41114062 (-) True XLOC_006864
TCONS_00013506 lncRNA upstream 4828 42031307 ~ 42045075 (-) True XLOC_006875
TCONS_00013885 lncRNA upstream 97383 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013884 lncRNA upstream 97383 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013886 lncRNA upstream 123321 42149800 ~ 42186670 (-) True XLOC_006877
TCONS_00013211 lncRNA upstream 458605 42485084 ~ 42487238 (-) False XLOC_006880
TCONS_00013205 mRNA downstream 74797 41944138 ~ 41947996 (-) True XLOC_006872
TCONS_00013204 mRNA downstream 105743 41910342 ~ 41917050 (-) True XLOC_006871
TCONS_00013203 mRNA downstream 114210 41887584 ~ 41908583 (-) True XLOC_006870
TCONS_00013202 mRNA downstream 121568 41887575 ~ 41901225 (-) False XLOC_006870
TCONS_00013198 mRNA downstream 540729 41171334 ~ 41482064 (-) True XLOC_006865
TCONS_00013206 mRNA upstream 20291 42046770 ~ 42066299 (-) True XLOC_006876
TCONS_00013207 mRNA upstream 246036 42272515 ~ 42306348 (-) True XLOC_006878
TCONS_00013208 mRNA upstream 335120 42361599 ~ 42400647 (-) True XLOC_006879
TCONS_00013209 mRNA upstream 454373 42480852 ~ 42536642 (-) False XLOC_006880
TCONS_00013210 mRNA upstream 454994 42481473 ~ 42530656 (-) False XLOC_006880
TCONS_00013201 other downstream 177726 41844953 ~ 41845067 (-) True XLOC_006868
TCONS_00013200 other downstream 359705 41662972 ~ 41663088 (-) True XLOC_006867
TCONS_00013199 other downstream 792384 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013170 other downstream 2780121 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013167 other downstream 3169541 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013213 other upstream 499842 42526321 ~ 42536960 (-) True XLOC_006880
TCONS_00013216 other upstream 571281 42597760 ~ 42602408 (-) True XLOC_006883
TCONS_00013220 other upstream 599293 42625772 ~ 42672791 (-) False XLOC_006884
TCONS_00013227 other upstream 884151 42910630 ~ 42910746 (-) True XLOC_006887
TCONS_00013236 other upstream 2061669 44088148 ~ 44088251 (-) True XLOC_006896

Expression Profile

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