Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00013207 |
| length | 2124 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 15 |
| gene id | XLOC_006878 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 42272515 ~ 42306348 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019805 | quinolinate biosynthetic process | biological_process |
| GO:0043420 | anthranilate metabolic process | biological_process |
| GO:0019363 | pyridine nucleotide biosynthetic process | biological_process |
| GO:0001878 | response to yeast | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0019674 | NAD metabolic process | biological_process |
| GO:0034354 | 'de novo' NAD biosynthetic process from tryptophan | biological_process |
| GO:0072015 | glomerular visceral epithelial cell development | biological_process |
| GO:0070189 | kynurenine metabolic process | biological_process |
| GO:0006569 | tryptophan catabolic process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0005741 | mitochondrial outer membrane | cellular_component |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0004502 | kynurenine 3-monooxygenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0016174 | NAD(P)H oxidase H2O2-forming activity | molecular_function |
| GO:0071949 | FAD binding | molecular_function |
| id | description |
|---|---|
| ko00380 | Tryptophan metabolism |
| id | description |
|---|---|
| ZDB-GENE-030424-4 | Predicted to enable NAD(P)H oxidase H2O2-forming activity; flavin adenine dinucleotide binding activity; and kynurenine 3-monooxygenase activity. Acts upstream of or within glomerular visceral epithelial cell development and response to yeast. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial outer membrane. Is expressed in liver; pronephric duct; and pronephros. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human KMO (kynurenine 3-monooxygenase). |
| ensembl_id | ENSDART00000003706 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013885 | lncRNA | downstream | 85845 | 42123862 ~ 42186670 (-) | False | XLOC_006877 |
| TCONS_00013884 | lncRNA | downstream | 85845 | 42123862 ~ 42186670 (-) | False | XLOC_006877 |
| TCONS_00013886 | lncRNA | downstream | 85845 | 42149800 ~ 42186670 (-) | True | XLOC_006877 |
| TCONS_00013506 | lncRNA | downstream | 227440 | 42031307 ~ 42045075 (-) | True | XLOC_006875 |
| TCONS_00013883 | lncRNA | downstream | 246036 | 42022793 ~ 42026479 (-) | True | XLOC_006874 |
| TCONS_00013211 | lncRNA | upstream | 178736 | 42485084 ~ 42487238 (-) | False | XLOC_006880 |
| TCONS_00013212 | lncRNA | upstream | 182040 | 42488388 ~ 42491295 (-) | False | XLOC_006880 |
| TCONS_00013219 | lncRNA | upstream | 318311 | 42624659 ~ 42626957 (-) | False | XLOC_006884 |
| TCONS_00013507 | lncRNA | upstream | 946005 | 43252353 ~ 43256270 (-) | True | XLOC_006891 |
| TCONS_00013231 | lncRNA | upstream | 1088921 | 43395269 ~ 43400669 (-) | True | XLOC_006892 |
| TCONS_00013206 | mRNA | downstream | 206216 | 42046770 ~ 42066299 (-) | True | XLOC_006876 |
| TCONS_00013205 | mRNA | downstream | 324519 | 41944138 ~ 41947996 (-) | True | XLOC_006872 |
| TCONS_00013204 | mRNA | downstream | 355465 | 41910342 ~ 41917050 (-) | True | XLOC_006871 |
| TCONS_00013203 | mRNA | downstream | 363932 | 41887584 ~ 41908583 (-) | True | XLOC_006870 |
| TCONS_00013202 | mRNA | downstream | 371290 | 41887575 ~ 41901225 (-) | False | XLOC_006870 |
| TCONS_00013208 | mRNA | upstream | 55251 | 42361599 ~ 42400647 (-) | True | XLOC_006879 |
| TCONS_00013209 | mRNA | upstream | 174504 | 42480852 ~ 42536642 (-) | False | XLOC_006880 |
| TCONS_00013210 | mRNA | upstream | 175125 | 42481473 ~ 42530656 (-) | False | XLOC_006880 |
| TCONS_00013214 | mRNA | upstream | 246147 | 42552495 ~ 42560662 (-) | True | XLOC_006881 |
| TCONS_00013215 | mRNA | upstream | 258318 | 42564666 ~ 42579437 (-) | True | XLOC_006882 |
| TCONS_00013201 | other | downstream | 427448 | 41844953 ~ 41845067 (-) | True | XLOC_006868 |
| TCONS_00013200 | other | downstream | 609427 | 41662972 ~ 41663088 (-) | True | XLOC_006867 |
| TCONS_00013199 | other | downstream | 1042106 | 41230293 ~ 41230409 (-) | True | XLOC_006866 |
| TCONS_00013170 | other | downstream | 3029843 | 39242555 ~ 39242672 (-) | True | XLOC_006848 |
| TCONS_00013167 | other | downstream | 3419263 | 38853137 ~ 38853252 (-) | True | XLOC_006846 |
| TCONS_00013213 | other | upstream | 219973 | 42526321 ~ 42536960 (-) | True | XLOC_006880 |
| TCONS_00013216 | other | upstream | 291412 | 42597760 ~ 42602408 (-) | True | XLOC_006883 |
| TCONS_00013220 | other | upstream | 319424 | 42625772 ~ 42672791 (-) | False | XLOC_006884 |
| TCONS_00013227 | other | upstream | 604282 | 42910630 ~ 42910746 (-) | True | XLOC_006887 |
| TCONS_00013236 | other | upstream | 1781800 | 44088148 ~ 44088251 (-) | True | XLOC_006896 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01180000_07491283_07505536.mRNA | True | 1422 | mRNA | 0.49 | 15 | CI01180000 | 7491283 ~ 7505536 (-) |
