RNA id: TCONS_00013205


Basic Information

Item Value
RNA id TCONS_00013205
length 2026
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_006872
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 41944138 ~ 41947996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCAATGCGATCGTGACGACTTCACCTGTCTGACGTCAGCTGCCGGAGTTCCGCGTGTTCGGAACTGCTGTGCATATCGGCTGCATATGTGGAATATATGATGGGAAGTCGCGGGGTTTTGTCGATTATCTTTGATTTGGATAACACGCTGATCGACACAGCCGGAGCAGGACGAACTGCCATTCAGAAGGTGTGCGAGCTGCTCAAGTCGACACACGTGCAGGAAAGCCACATCAGAGACATCTGTGAGCGCTTCTTACGAAAGCTTCTCCAAGAGTCCTTTGACCCATCAGAAGGAAAAACGATAGATGACGTGAGGATCCAGCACTGGTGTGAAGCCCTACAGGAGACACCGGGCACAGATCCTGATCCGGCTCTAGCCTCCAGATGCTACTACACATGGAAAAACACACGCTTACAGGCTTTGAGTTTGTCTTCAGAGGTTCGAGCACTGCTGGAGGAACTGCAGAAGAATTACAAACTGCTTCTGCTCACCAATGGTGACACTCAGACGCAGCGGGAGAAGATCGAAGCAGTGAGATGTGAGGGTCTCTTTAGTTTGGTGGTAGTCGGAGGAGATCATCCGGAGCAGAAGCCGGCGCGCTCCATCTTCACTCACTGCTTCGAGTCTGCAGGAGTTCGGCCGCAGGACTGCATCATGGTGGGAGATTCTCTTACCACAGACATCCAGGGAGGCGTTAATGCTGGAGTGCGGGCAACTGTGTGGATAAATGCTGGCAGTAAATCTCTCCCGCAGGACTCCGTAACTCCAGACTACACTCTACCTACTGTACTGCATCTGAAGGAAGTTCTAGCTCAGCTGGCAtgatgcacttttttatttttattttaaaggtgctatagaatgaaatttgttatttacttgggcatagctgaataataagagcTCAATATTGACATACCGTGAGCCTCAAACACCACTGTttccttgttctcatgtaaatcgaGTGAATGTAAAAGACAGGACAATCCAAACAAAACATTGACTGTCATGTTCCACAATGGATCATTAACATGCATGCTCCAGGAGGCGTTTGATTGGCCTCaatgtttcctagtgagattacaacagtgataattttcctattttaaatTCATCCAagcttcattcattaattttccttcagcttagtccctttattcatcagtggtcgccacagcggaatgaactgccaacttatccagcatatgttttacacagcggatgcccttccagctgcaaccccatactgggaaacacccatatacactcattaaacaatttagtttattcaattcacctatacctcatgcctttggactgtgtgggaaactcgatcaaacacggggagaacatgtaaactccacacagaaatgccctctgggccagctgggactcaaaccagcgactttcttgctgtgaggcaacagtgctaaccactgagccaccatgtcacccctaaACTagtataatcattcattttcttttccgcttagtccctttattaatctagggtcaccacagctgcccttccagctgcaacccatcactgggaaacccatacacagtcattcgcacacatacatacactatggacaatttagcctacccaattcacctgtaccacatgtcttcggactgtgggggaaaccggagcacccggaggaaacccacgcaaacgcagggagaacatgcaaactccacacagaaacgcaaactgacccagccgaggttcaaataagcgaccttcttgctgtgaggcgacagcactacctactgcgtcgccagCTTGTATTATACCTACTAAGctggactcttattttgaaagaGTAAAGGATCAGTTTTGTAAACCAGGCAAAGTGCAGATGTGGGATATGCAGATTATAAATTTATGCAGTGCCATCCCTAGAAGGGGTAACGcctatttaaatatgtcttttcGCAGTTCAACTTTGTATATTGTGAAGTTTGCAgagtatgtttgtaatgaggcaacaaataaatgtaaactgcaGAGTATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-050522-94 Predicted to enable hydrolase activity. Orthologous to human NANP (N-acetylneuraminic acid phosphatase).

Ensembl:

ensembl_id ENSDART00000132808

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013505 lncRNA downstream 74746 41867614 ~ 41869392 (-) True XLOC_006869
TCONS_00013881 lncRNA downstream 76307 41866169 ~ 41867831 (-) False XLOC_006869
TCONS_00013879 lncRNA downstream 830076 41011832 ~ 41114062 (-) False XLOC_006864
TCONS_00013880 lncRNA downstream 830076 41029460 ~ 41114062 (-) True XLOC_006864
TCONS_00013504 lncRNA downstream 966728 40970806 ~ 40977410 (-) True XLOC_006863
TCONS_00013882 lncRNA upstream 40908 41988904 ~ 41992203 (-) True XLOC_006873
TCONS_00013883 lncRNA upstream 74797 42022793 ~ 42026479 (-) True XLOC_006874
TCONS_00013506 lncRNA upstream 83311 42031307 ~ 42045075 (-) True XLOC_006875
TCONS_00013885 lncRNA upstream 175866 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013884 lncRNA upstream 175866 42123862 ~ 42186670 (-) False XLOC_006877
TCONS_00013204 mRNA downstream 27088 41910342 ~ 41917050 (-) True XLOC_006871
TCONS_00013203 mRNA downstream 35555 41887584 ~ 41908583 (-) True XLOC_006870
TCONS_00013202 mRNA downstream 42913 41887575 ~ 41901225 (-) False XLOC_006870
TCONS_00013197 mRNA downstream 397359 41170686 ~ 41546779 (-) False XLOC_006865
TCONS_00013196 mRNA downstream 462074 41125358 ~ 41482064 (-) False XLOC_006865
TCONS_00013206 mRNA upstream 98774 42046770 ~ 42066299 (-) True XLOC_006876
TCONS_00013207 mRNA upstream 324519 42272515 ~ 42306348 (-) True XLOC_006878
TCONS_00013208 mRNA upstream 413603 42361599 ~ 42400647 (-) True XLOC_006879
TCONS_00013209 mRNA upstream 532856 42480852 ~ 42536642 (-) False XLOC_006880
TCONS_00013210 mRNA upstream 533477 42481473 ~ 42530656 (-) False XLOC_006880
TCONS_00013201 other downstream 99071 41844953 ~ 41845067 (-) True XLOC_006868
TCONS_00013200 other downstream 281050 41662972 ~ 41663088 (-) True XLOC_006867
TCONS_00013199 other downstream 713729 41230293 ~ 41230409 (-) True XLOC_006866
TCONS_00013170 other downstream 2701466 39242555 ~ 39242672 (-) True XLOC_006848
TCONS_00013167 other downstream 3090886 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013213 other upstream 578325 42526321 ~ 42536960 (-) True XLOC_006880
TCONS_00013216 other upstream 649764 42597760 ~ 42602408 (-) True XLOC_006883
TCONS_00013220 other upstream 677776 42625772 ~ 42672791 (-) False XLOC_006884
TCONS_00013227 other upstream 962634 42910630 ~ 42910746 (-) True XLOC_006887
TCONS_00013236 other upstream 2140152 44088148 ~ 44088251 (-) True XLOC_006896

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_01671522_01672166.mRNA True 1064 mRNA 0.41 1 CI01000012 1671522 ~ 1672585 (+)