RNA id: CI01000006_00075230_00076159.mRNA


Basic Information

Item Value
RNA id CI01000006_00075230_00076159.mRNA
length 1860
RNA type mRNA
GC content 0.33
exon number 1
gene id CI01000006_00075230_00076159
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 74539 ~ 76398 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAAATGCTGAAAAAAGCAATAAAAAACATTACATCCTCAAAAGGTGTTGCACATGTATCTTCCAAAATTTCATAAAAGAAATGTATCATTGTGTCATAAATCATTTTTCAAGATTTGCAGGTTGTATCTTTACTTGTTACCATAAACACACAATCAGCAGCCTCACTGCTCATGGCAACAAATTCTATGAATAGTTTTTTTTTTTTTTTTTCCCCAATGGGGTAATGACTACGTCACAGAAAACAATATAAGCCACACATTAAAAGGCATGAAACTATTTTGAGAAAAAACAAGTCGTACTGTTTGACCTAATTATTATTGGGAGAATCGTAGGCAGAGTGAGGCAAAATGCTGCAGTTACATTTATAAAGTAAAATTCATTGCTGATAAAGTTGGTTGCTACTTCACATTAGGTAAATATAATTTTGCTAGTACATTTTTATAAAACCTGTTTTTTTTTTTTTGTTTTTTTTACGTTTGTGTGTTAAGACAATATATGTATCTCTTAAAAAACAGTTGTACACATGAGCATGCACAGGGAAATGCCGGATATGAAACAGGGAAATGCTGTTAATTTGTAATTTTACACAAAGTGGTAAGGTGATATGTTTAAGACAATATATAATTAGTGATGTCTGTTAATTATGTATTATGTTATTATGTTTTCAGATTTGTGTACAGCAACCAATGGACAACCTGACATTCACAAACAGCATTCTCCTCATGGAGGGACTGAAAGTTACACCTCAGTCATCTCAGCCTGTTTTCATCCTCCTTCTCTTGACTTATGTCTTTACAATGGTATCAAATATTGGACTTATATTTCTGATCTCAACAGAGAAGAATCTGCATGACCCAATGCATTTTCTGTTCTGCAACTTGCCACTGAATGACATACTAGGAACCACTGTCATTATGCCACGCTTGCTGCAGGATATTTTAAAGGACACCTCAGAGCGCTATATATCATATGCAGAGTGTGTTATTCAAGCTTATTTTGTGCATGTATTTACAGCAGCATGTCACTATGTGCTGATGATCATGGCCTTTGACAGATATGTGGCTATATGTAATCCATTGCGATACACATCTATAATGACCAATAAAATGGTTATTAAATTATCAGCATTTGCTTGGGGCCTGGCAATTCTTTTAGTGACAATTATGATAGGACTCACTCTGCGTCTGTCTCGCTGTAGGTATAAAATTGAAAACCCTTTCTGTGACAATGCCTCACTGTTTAAACTGTCCTGTGAAAATGTAGTCATAAATAATGTGTTTGGACTTGTTTATACTATCGTTGTACTCAGTCTGTCAGCGATGTGTATTTTCATAACATATGTCAAGATTGCTACTGTATGCATAACCAGCAAAAACAAAGCACTCAACAGCAAAGCCATAAAAACCTGCAGCACTCATTTAGCTGTTTATTTAATCATGTATGTTTCTGGAGCTACTTTTATTTTACTTCATCGTTTTCCTGAATACTCTGACAGCAGGAAACTAGCTAGTATAATGTTTCACATTGTACCACCGGGATTAAATCCCTTAGTATATGGTTTACAAACCAAAGAGATAAGACAAAAGATTGTAAAACACTGGTGTAGAAAAAAGTGAATTCCTCAGTGGATTATCTATCTTCATAACATAGTCAATATTATTTTAATGGATTTTGAGTGTGTGAAAAGAATATTTAATAATATTTAGCTAAGAATAACTAGTACTGTAACACTGCAAACACTGTAACTGTTCTGTACTCAAATCTTTTTCAGTATTTCTCAGTTGTTTGTATGAGAATTATTGACTTAAAATTTGAACTAATTTAAATTAAGTTGTAAGCTCATATTACCTGGAAA

Function

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04257 OLFR; olfactory receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46148 lncRNA upstream 55 74224 ~ 74484 (+) True G40660
TU46147 lncRNA upstream 2195 72128 ~ 72344 (+) True G40659
TU46122 lncRNA upstream 46873 27456 ~ 27666 (+) True G40635
TU46116 lncRNA upstream 54956 19354 ~ 19583 (+) True G40629
TU46197 lncRNA downstream 923 77321 ~ 77665 (+) True G40707
TU46206 lncRNA downstream 10192 86590 ~ 86832 (+) True G40716
TU46212 lncRNA downstream 17162 93560 ~ 93777 (+) True G40722
TU46256 lncRNA downstream 98829 175227 ~ 175447 (+) True G40766
TU46277 lncRNA downstream 152793 229191 ~ 233279 (+) True G40775
CI01000006_00060296_00061324.mRNA mRNA upstream 13114 60232 ~ 61425 (+) True CI01000006_00060296_00061324
CI01000006_00039405_00040475.mRNA mRNA upstream 32953 39333 ~ 41586 (+) True CI01000006_00039405_00040475
CI01000006_00004261_00005202.mRNA mRNA upstream 69091 2802 ~ 5448 (+) True CI01000006_00004261_00005202
CI01000006_00089909_00090850.mRNA mRNA downstream 13018 89416 ~ 91108 (+) True CI01000006_00089909_00090850
CI01000006_00110930_00139640.mRNA mRNA downstream 33976 110374 ~ 139894 (+) True CI01000006_00110930_00139640
CI01000006_00140414_00141739.mRNA mRNA downstream 63625 140023 ~ 142211 (+) True CI01000006_00140414_00141739
CI01000006_00143205_00144149.mRNA mRNA downstream 66367 142765 ~ 144542 (+) True CI01000006_00143205_00144149
CI01000006_00158417_00184263.mRNA mRNA downstream 81959 158357 ~ 184336 (+) True CI01000006_00158417_00184263
TU46274 other downstream 399067 475465 ~ 479194 (+) True G40772
TU46261 other downstream 404234 480632 ~ 483335 (+) False G40767
TU46269 other downstream 412477 488875 ~ 493026 (+) True G40768
TU46746 other downstream 1615667 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2569264 2645662 ~ 2660570 (+) True G41424

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037905 True 1962 mRNA 0.35 1 NC_007132.7 40268527 ~ 40270488 (+)