RNA id: CI01000006_00143205_00144149.mRNA


Basic Information

Item Value
RNA id CI01000006_00143205_00144149.mRNA
length 1778
RNA type mRNA
GC content 0.33
exon number 1
gene id CI01000006_00143205_00144149
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 142765 ~ 144542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTAAAAGGCAAGGGCAGATCAAGGTTCATTCAAAGATCAAGTATTTATATTTGATACTGAAAATTAATAGTGCTGACTACTACTTGATATCTAGCTTGTCATCTGTGAAGCAATAACTCAATCTTGTTGAATTGTGGAAAACATCTGAAGTAAGTATTTTTGTTTTGTTAGACATAAAATACAATATATTACTATACTGTAACTTTACTGTAACTTTTTTGATTTTTCAAATTACTTGTGGTGTTAAATTAATACAGTTCAAAATGATTGTGTGATTTCAAAAACATGCCAATTAGTGCAGAGTGTAAAAACTGATAAGACAGCAATCAATAATATTTATTATCTATAAAATATGCATCATAACGGTGAGGAAACAATGAGAGGTCTGATACTGTCTGTTACTTATTACTCTTTTGCAGATTTGAGTAGAGAAGCCAATGGACAACGAGACAGTAACAAACAGCATTCTCTTTGTGGAGGGATTGAAAGTTACACCTCAGTCTTCCTATCCTGTTTTCATCCTACTTCTCTTAGTTTATGCCTTTACTATGGGATGTAACATTGGACTTTTAATCCTGATCTCAACTGAGAGGAATCTGAATCACCCAATGCATTTTCTGTTCTGTAACTTGCCAGTGAATGATATAATTGGGACCTCTGTCATTTTGCCACGCTTACTGCAAGACATTTTAAGGGAACCCTCAGAGCGCTACATGACATATGTGGAGTGTGTTTTTCAAGCATATGTTGTACACATATTTGCAACTGTAAGCCACACTGCACTAATGATCATGGCCTTTGACAGATATGTGGCTATATGTAATCCATTGCGATACACAGCAATAATGACCAATAAAATGGTGGTTAAACTATCAGCATTAGCCTGGGGGTTGTCAGTACTTGCAGTGTCGATTCTGATAGGACTCACTGTACGCCTGTCTCGCTGCAGATATAAAATTGAAAACCCTTTCTGTGACAATGCCTCACTGTTTAAACTGTCCTGTGAGGACAGTGTGGTTATTAATAATTTGTATGGACTATTTTCTACTGTGATCATCTTTACTTTTTCACTTGGGTCTGTATTCATAACATATGGAAAAATTGTGGCAGTATGCAGAAGCAGGAAAAACAAATCACTCAACAGTAAAGCCATAAAAACATGTGGCACACACATAGCTGCATATATAATCATGTTTGTTTCTTGTGCCACTATGGTTTTTCTCCATCGTTTTCCAGAATACTCTGAAAACAGGAAACTAGCTAGTATAATGTTCCATATTGTACCACCAGGACTAAATCCTTTAGTATATGGTTTACAAACCAAAGAGATAAGACAAAAGACGGTTAAACTTTGCTGTAGAAACAAAGTTAATATAAAGTGATTTTTTATCGTATGGAAAAAATACTTTCATAAATATCTTGCTGAGGTTTACTTTGAACTTAAACTAAAAATAATGGTCTTGCACAGTTTTCATTTCTTTGTCTAACTGATTAACATCTAACATCTAACTCAATTTAAAGGAATAATAATTTATCTATAACAGTTGGTTAATTTCTTTAAAATATGTTTTTCCATCTATTTTCCGTCTCTTATGAATAGATTCTGAAACTGTAAAAAGAAAGTTTACACATTCACAGATATTTAGACACTTTAATTTTAATTGATGTCTCAGAACATTATATTTGCAAAACCAAGAAGATTCTATCCATTCTGACCATCTTTGTCAGTCTTTAGTTTTTACAAATGCTAAATTGGAGATTTCCCTCAGAGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46212 lncRNA upstream 48988 93560 ~ 93777 (+) True G40722
TU46206 lncRNA upstream 55933 86590 ~ 86832 (+) True G40716
TU46197 lncRNA upstream 65100 77321 ~ 77665 (+) True G40707
TU46148 lncRNA upstream 68281 74224 ~ 74484 (+) True G40660
TU46147 lncRNA upstream 70421 72128 ~ 72344 (+) True G40659
TU46256 lncRNA downstream 30685 175227 ~ 175447 (+) True G40766
TU46277 lncRNA downstream 84649 229191 ~ 233279 (+) True G40775
TU46298 lncRNA downstream 153869 298411 ~ 298726 (+) True G40796
TU46299 lncRNA downstream 154418 298960 ~ 299192 (+) True G40797
TU46301 lncRNA downstream 158473 303015 ~ 303227 (+) True G40799
CI01000006_00140414_00141739.mRNA mRNA upstream 554 140023 ~ 142211 (+) True CI01000006_00140414_00141739
CI01000006_00110930_00139640.mRNA mRNA upstream 2871 110374 ~ 139894 (+) True CI01000006_00110930_00139640
CI01000006_00089909_00090850.mRNA mRNA upstream 51657 89416 ~ 91108 (+) True CI01000006_00089909_00090850
CI01000006_00075230_00076159.mRNA mRNA upstream 66367 74539 ~ 76398 (+) True CI01000006_00075230_00076159
CI01000006_00060296_00061324.mRNA mRNA upstream 81340 60232 ~ 61425 (+) True CI01000006_00060296_00061324
CI01000006_00158417_00184263.mRNA mRNA downstream 13815 158357 ~ 184336 (+) True CI01000006_00158417_00184263
CI01000006_00278488_00290221.mRNA mRNA downstream 133946 278488 ~ 291704 (+) True CI01000006_00278488_00290221
CI01000006_00297085_00312816.mRNA mRNA downstream 152543 297085 ~ 313055 (+) True CI01000006_00297085_00312816
CI01000006_00315992_00319208.mRNA mRNA downstream 170520 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00363989_00372189.mRNA mRNA downstream 219447 363989 ~ 372264 (+) True CI01000006_00363989_00372189
TU46274 other downstream 330923 475465 ~ 479194 (+) True G40772
TU46261 other downstream 336090 480632 ~ 483335 (+) False G40767
TU46269 other downstream 344333 488875 ~ 493026 (+) True G40768
TU46746 other downstream 1547523 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2501120 2645662 ~ 2660570 (+) True G41424

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037902 True 1523 mRNA 0.34 2 NC_007132.7 40254429 ~ 40256146 (+)