RNA id: CI01000006_00297085_00312816.mRNA


Basic Information

Item Value
RNA id CI01000006_00297085_00312816.mRNA
length 1651
RNA type mRNA
GC content 0.49
exon number 10
gene id CI01000006_00297085_00312816
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 297085 ~ 313055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATGAGTCGCAGCATTGTGCGCCAGAGTAAGTTCCGGCATGTTTTTGGGCAGGCGGTGAAGGCGGATCAAGGTTATGATGATATTCGGGTTTCCAAAGTGACATGGGACAGCTCATTCTGTGCAGTTAACCCAAAGTTTCTGGCAGTTATAGTGGAATCCAGTGGCGGTGGAGCCTTTCTGGTCCTGCCTCTCTCAAAGATGGGTCGAGTGGACAAAAACTACCCTCTAGTGGTTGGACACTCAGGGCCTGTTCTGGACATTGACTGGTGTCCTCACAATGACAACATCCTGGCCAGCTGCTCTGAAGACACCAGTGCCATGGTATGGCAGATCCCTGACCACACTCCCTCTCGCCCCATCAGTGAGCCCATTGTGGTGCTGGAGGGTCACTCTAAACGTGTGGGCATCATCAAATGGCACCCCACTGCCCGCAACATACTCCTCACTGCAGGCAGTGATAATCTGATCATCATTTGGAATGTGGGCACTGGAGAACCCTTGATCACAATGGATGACCATCCTGATCTCATCTACAACGTCAGCTGGAACTACAATGGTAGCCTGTTCTGCACCACCTGCAAGGACCGTCGCCTCCGAGTGTGCGATCCCCGGAAAAGCGAAGTGGTGGCGGAGAGACTAGCCCCACATGAGGGCATCCGGCCAATGAGAGCCATTTTTACCAAAGAGGGCAACATTTTCACCACAGGTTTCACCAGGATGAGCCAGAGGGAGCTTGGCCTGTGGGATCCGACTAATTTTGAAGAGCCCATAGCATTACTGGAGTTGGACACAAGTAATGGAGTTTTATTGCCTTTTTATGATCCAGACACTAACATTGTGTATCTCAGTGGCAAGGGTGACAGCAGTATACGGTATTTTGAGATCACAGAGGAGCCTCCCTATGTGCATTACATCAGCACATTCAGTAGCAAGGAGCCACAGAGAGGAATGGGCTTCATGCCCAAGAGAGGAATGGACGTCACCAAGTGTGAGATTGCCAGATTATATAAACTCCATGAGAGAAAGTGTGAGCCTATCATGATGACAGTACCCAGAAAGTCGGACCTGTTCCAGGATGATCTGTATCCAGACACAGCAGGCCCAGATCCGGCTCTGGAACCTGAAGAATGGATGGATGGACGAGACGCAGACCCCATACTAGTGTCCATGAGGGATGGCTATGTTCCTCCAAAGAGCAGAGAGCTAAAGGTGGCCAAGAAGAACGTTCTAGACACCAGACCTGCAACACGTAGAAGCATGTCTGCTGTAGATGGAAGCAGTTTGCCACCACAGTTGTTGGAGAAGCTTGTTGAGGAGATCCAAAATCTGAAGGCCACAGTTCTCTCTCAGGAGAAGCGAATCTGTGACTTGGAGAATAAGCTCTCTAAGTACACTAATGGCACAGTCTGAATAACTCATCCTGTGCACATTACCCAATTCACTGCTAACTCTCACAACTAAAGTAAGAGCACAGATAGGCCAAGCCACCTCAACTCACCCCAGCTATGATTTAGTTTTATCAACACTGTAACTACAGTTCAAGTGGCTGTACAGCCACTTGACTTCACAGGCTCTTTCTAAATGTGAATGAATCACTTATAGTAGTTACATTTTGGAGCATTAGGAGATTTAATTTTGCAAAGGCACTA

Function

GO:

id name namespace
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46277 lncRNA upstream 63806 229191 ~ 233279 (+) True G40775
TU46256 lncRNA upstream 121638 175227 ~ 175447 (+) True G40766
TU46212 lncRNA upstream 203308 93560 ~ 93777 (+) True G40722
TU46206 lncRNA upstream 210253 86590 ~ 86832 (+) True G40716
TU46197 lncRNA upstream 219420 77321 ~ 77665 (+) True G40707
TU46313 lncRNA downstream 40665 353720 ~ 353963 (+) True G40811
TU46263 lncRNA downstream 46954 360009 ~ 484185 (+) False G40767
TU46264 lncRNA downstream 46954 360009 ~ 484185 (+) False G40767
TU46267 lncRNA downstream 46954 360009 ~ 484185 (+) False G40767
TU46257 lncRNA downstream 141478 454533 ~ 481208 (+) False G40767
CI01000006_00278488_00290221.mRNA mRNA upstream 5381 278488 ~ 291704 (+) True CI01000006_00278488_00290221
CI01000006_00158417_00184263.mRNA mRNA upstream 112749 158357 ~ 184336 (+) True CI01000006_00158417_00184263
CI01000006_00143205_00144149.mRNA mRNA upstream 152543 142765 ~ 144542 (+) True CI01000006_00143205_00144149
CI01000006_00140414_00141739.mRNA mRNA upstream 154874 140023 ~ 142211 (+) True CI01000006_00140414_00141739
CI01000006_00110930_00139640.mRNA mRNA upstream 157191 110374 ~ 139894 (+) True CI01000006_00110930_00139640
CI01000006_00315992_00319208.mRNA mRNA downstream 2007 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00363989_00372189.mRNA mRNA downstream 50934 363989 ~ 372264 (+) True CI01000006_00363989_00372189
CI01000006_00418370_00420217.mRNA mRNA downstream 105315 418370 ~ 420317 (+) True CI01000006_00418370_00420217
CI01000006_00423835_00428157.mRNA mRNA downstream 110038 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00502041_00503898.mRNA mRNA downstream 188986 502041 ~ 504306 (+) True CI01000006_00502041_00503898
TU46274 other downstream 162410 475465 ~ 479194 (+) True G40772
TU46261 other downstream 167577 480632 ~ 483335 (+) False G40767
TU46269 other downstream 175820 488875 ~ 493026 (+) True G40768
TU46746 other downstream 1379010 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2332607 2645662 ~ 2660570 (+) True G41424

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037918 False 1525 mRNA 0.49 11 NC_007132.7 40484088 ~ 40529181 (+)