Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU46551 |
| length | 1179 |
| lncRNA type | read_through |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G41008 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 978823 ~ 1008004 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46556 | lncRNA | upstream | 4355 | 974176 ~ 974468 (+) | True | G41013 |
| TU46456 | lncRNA | upstream | 72754 | 904785 ~ 906069 (+) | True | G40919 |
| TU46462 | lncRNA | upstream | 192495 | 723821 ~ 786328 (+) | True | G40925 |
| TU46472 | lncRNA | upstream | 263173 | 714904 ~ 715650 (+) | True | G40935 |
| TU46442 | lncRNA | upstream | 310418 | 657702 ~ 658109 (+) | False | G40910 |
| TU46530 | lncRNA | downstream | 15382 | 1023386 ~ 1027790 (+) | True | G40987 |
| TU46541 | lncRNA | downstream | 20704 | 1028708 ~ 1031192 (+) | True | G40998 |
| TU46581 | lncRNA | downstream | 176061 | 1184065 ~ 1185743 (+) | True | G41028 |
| TU46604 | lncRNA | downstream | 214086 | 1222090 ~ 1223864 (+) | True | G41045 |
| TU46617 | lncRNA | downstream | 242401 | 1250405 ~ 1253695 (+) | True | G41056 |
| CI01000006_00946696_00969588.mRNA | mRNA | upstream | 7665 | 946696 ~ 971158 (+) | True | CI01000006_00946696_00969588 |
| CI01000006_00926597_00930448.mRNA | mRNA | upstream | 47622 | 926285 ~ 931201 (+) | True | CI01000006_00926597_00930448 |
| CI01000006_00812192_00902946.mRNA | mRNA | upstream | 75719 | 812192 ~ 903104 (+) | True | CI01000006_00812192_00902946 |
| CI01000006_00800935_00809574.mRNA | mRNA | upstream | 168541 | 799319 ~ 810282 (+) | True | CI01000006_00800935_00809574 |
| CI01000006_00766356_00790875.mRNA | mRNA | upstream | 187668 | 765966 ~ 791155 (+) | True | CI01000006_00766356_00790875 |
| CI01000006_01032572_01040625.mRNA | mRNA | downstream | 24568 | 1032572 ~ 1041142 (+) | True | CI01000006_01032572_01040625 |
| CI01000006_01139490_01142592.mRNA | mRNA | downstream | 130951 | 1138955 ~ 1142825 (+) | True | CI01000006_01139490_01142592 |
| CI01000006_01149220_01154850.mRNA | mRNA | downstream | 141037 | 1149041 ~ 1155314 (+) | True | CI01000006_01149220_01154850 |
| CI01000006_01158519_01160763.mRNA | mRNA | downstream | 149725 | 1157729 ~ 1161006 (+) | True | CI01000006_01158519_01160763 |
| CI01000006_01525438_01530330.mRNA | mRNA | downstream | 517434 | 1525438 ~ 1530375 (+) | True | CI01000006_01525438_01530330 |
| TU46269 | other | upstream | 485797 | 488875 ~ 493026 (+) | True | G40768 |
| TU46261 | other | upstream | 495488 | 480632 ~ 483335 (+) | False | G40767 |
| TU46274 | other | upstream | 499629 | 475465 ~ 479194 (+) | True | G40772 |
| TU46746 | other | downstream | 684061 | 1692065 ~ 1695821 (+) | True | G41170 |
| TU47032 | other | downstream | 1637658 | 2645662 ~ 2660570 (+) | True | G41424 |
| TU47211 | other | downstream | 1828163 | 2836167 ~ 2839421 (+) | True | G41591 |
| TU47109 | other | downstream | 2721226 | 3729230 ~ 3734202 (+) | False | G41496 |
| TU47105 | other | downstream | 2726094 | 3734098 ~ 3734202 (+) | False | G41496 |
