RNA id: CI01000006_00800935_00809574.mRNA



Basic Information


Item Value
RNA id CI01000006_00800935_00809574.mRNA
length 2597
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000006_00800935_00809574
representative True

Chromosome Information


Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 799319 ~ 810282 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAACCCTCACGAGAGTCTTAAGAAATGTGTGATGTAATTTTTTGCTTCATATGCAAATGTCTATCCACCAAAACAGGGATCAGCTGAAAGGCATGGCAGTAAAACACACTGGTGTTGAGGTGTAAAATATGTTACTGGGGTGTATGACAATTTCACCCAATGCAACATGTTCCTGGATCAACAGCTTTGTTGATCCTGGAACAACATTCCAATCAACCAATCAGATTTGAGGGACAAGTTTACAGTTTTTGTCAAGCTTAGGCTTACAACCAGGGTTAGGTTCTTCTACATCAGTGTTATTCACCTATAATTTCCCTCTGATTTTAGGGATAACTTATGGGTAGGGTTAGGTTTATGGGTAGGGATTACATTTTCAGACATGAATGTTGTTCCAGGATCAACAAACTATGTTGACCCAGGAACGCGTATAAAAATCAGGACATGCAGTGTATGACCTACTTTTCAGTTGTTGTTCATAATATATTTATTGGGATCAACAGATTTAATGTTTCCTTGAAGAAATTGTTAATCTAAAAATTAAATTACTGTCATCATTTACTGAGATTTCGATCGAATGTTTCAATATAAGAGTGCCCTTGATAAAAAAGGAAAAATCTTTTTAAAAAATCCAGTTTAAAACATGTGGCAAGTCCTTAGTCTTTGTGTTCTCGTTGTTTCATATGCTTATGATTTAATTAAATTTAAGTTTTACATTTATCTTGAATTAAATTGAATGACTCTGAAAACATCATTGGATTACTTGAAACAGCGTTTATGGCATAAACACATTAGAATACATTTACACATTCACATGATCAATCCCAGACAATAACTTAATGAAAAGGAGAAACTAAATACACCCCTCCCCCCCGCAGTCGAACTGCCCTGGAAGGAGGAGGCTCTGGAGGTGGACAAAGAGCTGGTAAAGACCTGGAAACAGGCAGACATGTCAGTGAGCGAGACCAGGGTGGAGTAGACTGTGGAAGCGCCCATGGAGGAGTGGATGGTGGAAGAATCCATGGATGAGCAGACGGCCAGAGATGGGAGATGGTGAGTCCCAGGCGAAGTCTGATTAACCAAGAGATCCAGCAACATTGATGGACACAGGGACCAAGGCGGATTCCTGCCGACGAGTGACCAAGGTGGAGCCTGGGGGCGGTGGACTAAGGCAATGCCAGTGTGAGCGTGTTCCCCGGTGAAGCCTGAGGGAAGAAGGAGTCCGACAGAGCCATAAGGGTGAAGGGCTGGAGCGAGGCAGACAGCCCAGAAGTTCGTGGCGATGATGCGGTGATGACTGACCCACGTGGAGCCTGTGGGACGAGGGAGCCTGGTGCAGCCAAAGGGACGACGGTCCTGGGCAGAGCTGAGGGGGCAAGGAGCCAGAGTGGAGCTGACTGGTCGACAGTCCAAGGTGGAGCTGAGGGCTCGGAGGGATGAGGCAGAGCCAGGGAATCCCCATGCCACGGCGGAGCAGGTGACTCAAAGTCCCAAGGAGGATCCAGGTTGCATCGCGGAGCCACTGGATGAGCCGAAGGGCTGAGGGGAGCCAGCAGAGGCAGGACCGAAGGAGAGACTGGCTTCGTTGAACTAAACAGGAGAGGAAGGTTGAGTATGGAGACAGACTTGGAAAGGGACAGGGATGGTAGCGGTGAAGACAGTACTGTGCTGGATGGGGATTCCAGCGATGAAAATGAAGATTCACTGATGGCCAGAATTTTTAACGGCAGCAGAGGTAGTTCTCCGAGCCAGCAGGGGGAGCTCCGGCCCCTACCTCCTTTTGCTCTCATGGTGGAGAGAGAGAACGAGGCAAGGGCTGTTGTGTATAAATCTGAATCTCTTATGAGGAGATGGGGTATGGCAAACTTTTATTCCCACGGATTTTAACTGAATCAGACGCTTTTGTCAGTCTTATCTATACCACCTCCCTCCCACTTTTTCTTATTTTGTTTCATTTTTCATTTTCTCCCTCCGTTTCTGGGCACAAGTTAACATTCTGTATTTTTTTCAAAACCCTAAGGGCCCCGAGTGATCATGTAAGTTTTACCTTAAGACAGGAAAAAAAGCTTTTTTTATATAAATAACTAAATGGCAATATCTTTGAAACACATGCAGGGAGTCCAGCTCAAGTGAAATATCATGAAATGCATAATTTGGATCATGCTATTATAAGGCCAGTTTAGAGCGAGCAGCTGAATTTGATGACAGAAAAACCTTTCACCAGCTTAGGTCAGAGAGTCCGATCTCCAGGAGCAACCCTTTAAAAAAAGGGCTTTTAATGTGTAAAGAGAGCTGGCCGAACTCACATTTGCACTTGATGGTGCTGAGGCCTCTCCACGGACGCTCTGCCTCGCGCTCTAGCTGTACACCAGTGACGGGTTTGCGCGGCCCACCATCACCTACTGGGCTTTTGCCCATCTCATAATTAAGTCCATTGGATGCCAGTGCAATTGATGTACCTTTTTTTTATTATTATTCATGCTTTTAAGAAAGCAACATTTCAAGAGCCAAAATGGCCTACTTATGAAGTTGTCAAGCTTCATGTGCCATAGAGGTGCCCGCAGATCTGGTGCGTACAGCCGAGCAAGAGTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46462 lncRNA upstream 12991 723821 ~ 786328 (+) True G40925
TU46472 lncRNA upstream 83669 714904 ~ 715650 (+) True G40935
TU46441 lncRNA upstream 130914 657702 ~ 658109 (+) False G40910
TU46442 lncRNA upstream 130914 657702 ~ 658109 (+) False G40910
TU46443 lncRNA upstream 130914 657702 ~ 658109 (+) True G40910
TU46456 lncRNA downstream 94503 904785 ~ 906069 (+) True G40919
TU46556 lncRNA downstream 163894 974176 ~ 974468 (+) True G41013
TU46551 lncRNA downstream 168541 978823 ~ 1008004 (+) True G41008
TU46530 lncRNA downstream 213104 1023386 ~ 1027790 (+) True G40987
TU46541 lncRNA downstream 218426 1028708 ~ 1031192 (+) True G40998
CI01000006_00766356_00790875.mRNA mRNA upstream 8164 765966 ~ 791155 (+) True CI01000006_00766356_00790875
CI01000006_00674724_00686031.mRNA mRNA upstream 112813 673855 ~ 686506 (+) True CI01000006_00674724_00686031
CI01000006_00666971_00667988.mRNA mRNA upstream 130930 666793 ~ 668389 (+) False CI01000006_00666971_00667988
CI01000006_00647015_00654423.mRNA mRNA upstream 144302 647015 ~ 655017 (+) True CI01000006_00647015_00654423
CI01000006_00612891_00618198.mRNA mRNA upstream 180947 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00812192_00902946.mRNA mRNA downstream 1910 812192 ~ 903104 (+) True CI01000006_00812192_00902946
CI01000006_00926597_00930448.mRNA mRNA downstream 116003 926285 ~ 931201 (+) True CI01000006_00926597_00930448
CI01000006_00946696_00969588.mRNA mRNA downstream 136414 946696 ~ 971158 (+) True CI01000006_00946696_00969588
CI01000006_00993313_01003875.mRNA mRNA downstream 182722 993004 ~ 1004140 (+) True CI01000006_00993313_01003875
CI01000006_01006114_01006327.mRNA mRNA downstream 195832 1006114 ~ 1006594 (+) True CI01000006_01006114_01006327
TU46269 other upstream 306293 488875 ~ 493026 (+) True G40768
TU46261 other upstream 315984 480632 ~ 483335 (+) False G40767
TU46274 other upstream 320125 475465 ~ 479194 (+) True G40772
TU46746 other downstream 881783 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 1835380 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2025885 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 2918948 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 2923816 3734098 ~ 3734202 (+) False G41496

Expression Profile