Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU46443 |
| length | 305 |
| lncRNA type | sense_over |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G40910 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 657702 ~ 658109 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU46435 | lncRNA | upstream | 27270 | 626733 ~ 630432 (+) | True | G40904 |
| TU46383 | lncRNA | upstream | 106346 | 529128 ~ 551356 (+) | True | G40852 |
| TU46270 | lncRNA | upstream | 165390 | 488407 ~ 492312 (+) | False | G40768 |
| TU46268 | lncRNA | upstream | 165390 | 488875 ~ 492312 (+) | False | G40768 |
| TU46265 | lncRNA | upstream | 173517 | 482804 ~ 484185 (+) | True | G40767 |
| TU46472 | lncRNA | downstream | 46499 | 714904 ~ 715650 (+) | True | G40935 |
| TU46462 | lncRNA | downstream | 55416 | 723821 ~ 786328 (+) | True | G40925 |
| TU46456 | lncRNA | downstream | 236380 | 904785 ~ 906069 (+) | True | G40919 |
| TU46556 | lncRNA | downstream | 305771 | 974176 ~ 974468 (+) | True | G41013 |
| TU46551 | lncRNA | downstream | 310418 | 978823 ~ 1008004 (+) | True | G41008 |
| CI01000006_00647015_00654423.mRNA | mRNA | upstream | 2685 | 647015 ~ 655017 (+) | True | CI01000006_00647015_00654423 |
| CI01000006_00612891_00618198.mRNA | mRNA | upstream | 39330 | 611987 ~ 618372 (+) | True | CI01000006_00612891_00618198 |
| CI01000006_00586425_00608567.mRNA | mRNA | upstream | 48611 | 585968 ~ 609091 (+) | True | CI01000006_00586425_00608567 |
| CI01000006_00537552_00548276.mRNA | mRNA | upstream | 109111 | 537452 ~ 548591 (+) | True | CI01000006_00537552_00548276 |
| CI01000006_00502041_00503898.mRNA | mRNA | upstream | 153396 | 502041 ~ 504306 (+) | True | CI01000006_00502041_00503898 |
| CI01000006_00674724_00686031.mRNA | mRNA | downstream | 5450 | 673855 ~ 686506 (+) | True | CI01000006_00674724_00686031 |
| CI01000006_00766356_00790875.mRNA | mRNA | downstream | 97561 | 765966 ~ 791155 (+) | True | CI01000006_00766356_00790875 |
| CI01000006_00800935_00809574.mRNA | mRNA | downstream | 130914 | 799319 ~ 810282 (+) | True | CI01000006_00800935_00809574 |
| CI01000006_00812192_00902946.mRNA | mRNA | downstream | 143787 | 812192 ~ 903104 (+) | True | CI01000006_00812192_00902946 |
| CI01000006_00926597_00930448.mRNA | mRNA | downstream | 257880 | 926285 ~ 931201 (+) | True | CI01000006_00926597_00930448 |
| TU46269 | other | upstream | 164676 | 488875 ~ 493026 (+) | True | G40768 |
| TU46261 | other | upstream | 174367 | 480632 ~ 483335 (+) | False | G40767 |
| TU46274 | other | upstream | 178508 | 475465 ~ 479194 (+) | True | G40772 |
| TU46746 | other | downstream | 1023660 | 1692065 ~ 1695821 (+) | True | G41170 |
| TU47032 | other | downstream | 1977257 | 2645662 ~ 2660570 (+) | True | G41424 |
| TU47211 | other | downstream | 2167762 | 2836167 ~ 2839421 (+) | True | G41591 |
| TU47109 | other | downstream | 3060825 | 3729230 ~ 3734202 (+) | False | G41496 |
| TU47105 | other | downstream | 3065693 | 3734098 ~ 3734202 (+) | False | G41496 |
