RNA id: TU46270


Basic Information

Item Value
RNA id TU46270
length 754
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G40768
representative False

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 488407 ~ 493026 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACGTGTATAATGAGCTTAAAGGAAACTAAACACCTTAGTCACTGCAATCATAAAAACATCAACTTGTGCCGCTGCAGTGAAGACAGGAGGCAAAAGTATTGTTTGACTTTTTATTCTGAAAAAAATCCAATAGTTTACAGACGACGTCCACGACGACCTCCCTTTCTGCGGGTGCTGTCTGATGGAATGGGGGTGACGTCCTCTGAAAAAGAAAACGAAAGTGAATTAGACTTCCTCATGGAAAACTATTCATAACCCACTGAACAGAGATCAGGCTTCATTAGATGACACTGTCAGATTTCACGTACCGATACGGCCGATCTTCATGCCAGAACGAGCCAGAGCCCTGAGGGCAGACTGTGCCCCTGGTCCTGGTGTCTTGGTTCTGTTTCCACCAGTGGCCCTCAGCTTGATGTGCAGGGCGGTAATTCCCAGCTCCTTGCACCTCTGAGCCACATCCTGAGCCGCCAACATAGCAGCATAAGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATCCCACCAGTAACACGGCAGATTGTTTCTCTGCGGAGAGATCAGTGACATGCACAAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAACACATTCTCGCCTTCGGCAACCTGAGGTCCCAGACTGATGACCTGCTCTTCCTTCTTTTCCTTACCCTTGCGAGGTGCCATTGCTGAAAAAAATTAAACATTCAACAGTCAGGCCAAATTAATATGAAAAACATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46263 lncRNA upstream 4222 360009 ~ 484185 (+) False G40767
TU46264 lncRNA upstream 4222 360009 ~ 484185 (+) False G40767
TU46267 lncRNA upstream 4222 360009 ~ 484185 (+) False G40767
TU46258 lncRNA upstream 4222 482804 ~ 484185 (+) False G40767
TU46265 lncRNA upstream 4222 482804 ~ 484185 (+) True G40767
TU46383 lncRNA downstream 36816 529128 ~ 551356 (+) True G40852
TU46435 lncRNA downstream 134421 626733 ~ 630432 (+) True G40904
TU46441 lncRNA downstream 165390 657702 ~ 658109 (+) False G40910
TU46442 lncRNA downstream 165390 657702 ~ 658109 (+) False G40910
TU46443 lncRNA downstream 165390 657702 ~ 658109 (+) True G40910
CI01000006_00423835_00428157.mRNA mRNA upstream 60038 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00418370_00420217.mRNA mRNA upstream 68090 418370 ~ 420317 (+) True CI01000006_00418370_00420217
CI01000006_00363989_00372189.mRNA mRNA upstream 116143 363989 ~ 372264 (+) True CI01000006_00363989_00372189
CI01000006_00315992_00319208.mRNA mRNA upstream 169021 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00297085_00312816.mRNA mRNA upstream 175352 297085 ~ 313055 (+) True CI01000006_00297085_00312816
CI01000006_00502041_00503898.mRNA mRNA downstream 9729 502041 ~ 504306 (+) True CI01000006_00502041_00503898
CI01000006_00537552_00548276.mRNA mRNA downstream 45140 537452 ~ 548591 (+) True CI01000006_00537552_00548276
CI01000006_00586425_00608567.mRNA mRNA downstream 93656 585968 ~ 609091 (+) True CI01000006_00586425_00608567
CI01000006_00612891_00618198.mRNA mRNA downstream 119675 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00647015_00654423.mRNA mRNA downstream 154703 647015 ~ 655017 (+) True CI01000006_00647015_00654423
TU46261 other upstream 5072 480632 ~ 483335 (+) False G40767
TU46274 other upstream 9213 475465 ~ 479194 (+) True G40772
TU46746 other downstream 1199753 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2153350 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2343855 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 3236918 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 3241786 3734098 ~ 3734202 (+) False G41496

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU277511 True 221 lncRNA 0.41 1 CI01000057 871777 ~ 871997 (-)
striped catfish (Pangasianodon hypophthalmus) TU277511 True 3440 lncRNA 0.40 3 NC_047609.1 3760673 ~ 3765952 (+)