RNA id: TU46435


Basic Information

Item Value
RNA id TU46435
length 1168
lncRNA type antisense_over
GC content 0.26
exon number 3
gene id G40904
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 626733 ~ 630432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTAAATGAATTTCATTGAAGGAGCAAAAACAAAGCAACTAGCAATATTTTGTCTAAAATGTAAATGACTCAATATTAACTTCCTGTTTATTAAAGTGTTGTATAAAAGCAATTATTACACTCACAATCTTATTGTTGATTCCAACATCACAATGGCTGTATTTACATGTCATTCAGAACAGCACTCTTGCTTGTGTGTTATTGCTTGAATATCAATTTTAGATCTTCCAAAAAAGTTTGGAAACATGGAAAAAATGAACATGACTAGTCCAGGATCTTGTTTGAATTAGAATTAAAGTCATAATCTTAAACAACTAGAAAAAAATGTAATGTCACAGTTTCATTTCACATAATCACATGATACCCACACTGGATAATCATTTAGAAACTACCAAATCCAGTCATACTGAGACAAAAAAACGAAACAAAAAAACAAAAAAACAAAAAAAAATGGGTTTCACATATCACCTTACACAAAGTACAAGAGTTTTGCTCTGTTACAGATAATTCTTCTGTGTGACAACTATAAAAACAGCAGAAGAAGAATATATATGTGAAAGATACATGAATGCCTCATCCTTATTTTAGGCTGCAAATCTTGCTTGTGTGCATCATTTATGCCCTTGTGTCATATCTCCCATAAATGCGACAGCGACAGAAAGATTTACAGATTGTAAGGAAACTTGTCTTGTCAGAGAGCAACAAAAACTCTCTGTAAGAGATGGGAAAAATGATTTGGTTTGCTGTTTTCTTGTCAGTCTCTTTTGGCAGCCAATTTACAAACAGGAAGAAAGATCATTAATATTATTACAAAAAGAGTTTTCCAAAGTTAATATATTATATATGGTTTACATTAACAGAAGTATTAGAGCAATTGTAAAAAATAACACTCGGAGGTGAGCAGATTCATTTCTTCTTATTTACAATATTGTTGCTGATCCAGTTCATGCCATCCTGTACACCTTCTCCAGATACGGCAGAACAGGCCTGGATCTGCCACTCTCTGTCCCGGTACGTGTGCAGGTTGAGGCCCTCCGCGATCTCACTGGCAGGGGAGGCCGTGGCCAGGTCTTGTTTATTGGCAAAGATGAGCAATGGCACACCCTTCAGGTTCTCCTCATCGATGAGCTCCGACAACTCCAGTCCTGTTTCCTCAAATCTCTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46383 lncRNA upstream 75377 529128 ~ 551356 (+) True G40852
TU46270 lncRNA upstream 134421 488407 ~ 492312 (+) False G40768
TU46268 lncRNA upstream 134421 488875 ~ 492312 (+) False G40768
TU46258 lncRNA upstream 142548 482804 ~ 484185 (+) False G40767
TU46265 lncRNA upstream 142548 482804 ~ 484185 (+) True G40767
TU46441 lncRNA downstream 27270 657702 ~ 658109 (+) False G40910
TU46442 lncRNA downstream 27270 657702 ~ 658109 (+) False G40910
TU46443 lncRNA downstream 27270 657702 ~ 658109 (+) True G40910
TU46472 lncRNA downstream 84472 714904 ~ 715650 (+) True G40935
TU46462 lncRNA downstream 93389 723821 ~ 786328 (+) True G40925
CI01000006_00612891_00618198.mRNA mRNA upstream 8361 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00586425_00608567.mRNA mRNA upstream 17642 585968 ~ 609091 (+) True CI01000006_00586425_00608567
CI01000006_00537552_00548276.mRNA mRNA upstream 78142 537452 ~ 548591 (+) True CI01000006_00537552_00548276
CI01000006_00502041_00503898.mRNA mRNA upstream 122427 502041 ~ 504306 (+) True CI01000006_00502041_00503898
CI01000006_00423835_00428157.mRNA mRNA upstream 198364 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00647015_00654423.mRNA mRNA downstream 16583 647015 ~ 655017 (+) True CI01000006_00647015_00654423
CI01000006_00666971_00667988.mRNA mRNA downstream 36361 666793 ~ 668389 (+) False CI01000006_00666971_00667988
CI01000006_00674724_00686031.mRNA mRNA downstream 43423 673855 ~ 686506 (+) True CI01000006_00674724_00686031
CI01000006_00766356_00790875.mRNA mRNA downstream 135534 765966 ~ 791155 (+) True CI01000006_00766356_00790875
CI01000006_00800935_00809574.mRNA mRNA downstream 168887 799319 ~ 810282 (+) True CI01000006_00800935_00809574
TU46269 other upstream 133707 488875 ~ 493026 (+) True G40768
TU46261 other upstream 143398 480632 ~ 483335 (+) False G40767
TU46274 other upstream 147539 475465 ~ 479194 (+) True G40772
TU46746 other downstream 1061633 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2015230 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2205735 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 3098798 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 3103666 3734098 ~ 3734202 (+) False G41496

Expression Profile