RNA id: TU46383


Basic Information

Item Value
RNA id TU46383
length 447
lncRNA type read_through
GC content 0.30
exon number 2
gene id G40852
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 529128 ~ 551356 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAAACATTTTAGAACACAGTTTATGACTTTAATAGTATTGTTGTAGTGTTTGTTCTGTTGCCAGAACGATTGTTGTTTGTAATGGATTATAAGATAATGAACAGGTAAGACTTTAAAACAGTTTCAACTGAAATCAATATTTCATGTCCGCATAATTATTTATTTGGTAAAAAGCAGTGTAACAAGTGGTATGACTGTACATTATCCCTTAAATGTTCGTCTTGTTCGAACCTGTCCGTTTGTCTTGGCTCAAAGCCGCTTGCTAGGAACTATTTTTCCTTCGCGCAAGCTTTCAGTTGAGAAAATATCATTATCTTACGTTCTTATGTGAAAAACAGCTAACAAATTTCTTATGTTTAATTGCAAAATGAGTGAATGTTAAGGTGTAAATCTAGTAAAATTCCAATATGAAAATCTTCATATATTAAATAACCATGTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46270 lncRNA upstream 36816 488407 ~ 492312 (+) False G40768
TU46268 lncRNA upstream 36816 488875 ~ 492312 (+) False G40768
TU46264 lncRNA upstream 44943 360009 ~ 484185 (+) False G40767
TU46435 lncRNA downstream 75377 626733 ~ 630432 (+) True G40904
TU46441 lncRNA downstream 106346 657702 ~ 658109 (+) False G40910
TU46442 lncRNA downstream 106346 657702 ~ 658109 (+) False G40910
TU46443 lncRNA downstream 106346 657702 ~ 658109 (+) True G40910
TU46472 lncRNA downstream 163548 714904 ~ 715650 (+) True G40935
CI01000006_00502041_00503898.mRNA mRNA upstream 24822 502041 ~ 504306 (+) True CI01000006_00502041_00503898
CI01000006_00423835_00428157.mRNA mRNA upstream 100759 423093 ~ 428369 (+) True CI01000006_00423835_00428157
CI01000006_00418370_00420217.mRNA mRNA upstream 108811 418370 ~ 420317 (+) True CI01000006_00418370_00420217
CI01000006_00363989_00372189.mRNA mRNA upstream 156864 363989 ~ 372264 (+) True CI01000006_00363989_00372189
CI01000006_00315992_00319208.mRNA mRNA upstream 209742 315062 ~ 319386 (+) True CI01000006_00315992_00319208
CI01000006_00586425_00608567.mRNA mRNA downstream 34612 585968 ~ 609091 (+) True CI01000006_00586425_00608567
CI01000006_00612891_00618198.mRNA mRNA downstream 60631 611987 ~ 618372 (+) True CI01000006_00612891_00618198
CI01000006_00647015_00654423.mRNA mRNA downstream 95659 647015 ~ 655017 (+) True CI01000006_00647015_00654423
CI01000006_00666971_00667988.mRNA mRNA downstream 115437 666793 ~ 668389 (+) False CI01000006_00666971_00667988
CI01000006_00674724_00686031.mRNA mRNA downstream 122499 673855 ~ 686506 (+) True CI01000006_00674724_00686031
TU46269 other upstream 36102 488875 ~ 493026 (+) True G40768
TU46261 other upstream 45793 480632 ~ 483335 (+) False G40767
TU46274 other upstream 49934 475465 ~ 479194 (+) True G40772
TU46746 other downstream 1140709 1692065 ~ 1695821 (+) True G41170
TU47032 other downstream 2094306 2645662 ~ 2660570 (+) True G41424
TU47211 other downstream 2284811 2836167 ~ 2839421 (+) True G41591
TU47109 other downstream 3177874 3729230 ~ 3734202 (+) False G41496
TU47105 other downstream 3182742 3734098 ~ 3734202 (+) False G41496

Expression Profile