RNA id: TU54186


Basic Information

Item Value
RNA id TU54186
length 252
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G47638
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10974694 ~ 10988803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGATGATGAGAGGGATGAAGTACAGCCAGTTCCAGGTGTTCCCAGAGGCATCATTGGCATGATATAGTACATCAGTCCATCCTTCCATAGTGATGCATTGGAAGACTGTGAGGATGGCGAAGAGGATGTTATCGAAATTTGTGATGCCGAAATTGGGTCCTTTCCAGTACTCCTTACACGTTGTTCCATTGGGACACTGTCTTGCGGATTTCTCCATACCACATGGGTAATCACCAACCTTTTCTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54170 lncRNA downstream 49084 10917556 ~ 10925610 (-) True G47622
TU54166 lncRNA downstream 60596 10913811 ~ 10914098 (-) True G47618
TU54131 lncRNA downstream 61455 10862069 ~ 10913239 (-) True G47584
TU54149 lncRNA downstream 69407 10904852 ~ 10905287 (-) True G47601
TU54130 lncRNA downstream 100926 10837059 ~ 10873768 (-) False G47583
TU54203 lncRNA upstream 28960 11017763 ~ 11019209 (-) True G47654
TU54218 lncRNA upstream 66100 11054903 ~ 11055581 (-) True G47668
TU54223 lncRNA upstream 74870 11063673 ~ 11069048 (-) True G47673
TU54231 lncRNA upstream 122811 11111614 ~ 11115511 (-) True G47681
TU54350 lncRNA upstream 298832 11287635 ~ 11290951 (-) False G47758
CI01000006_10676705_10699710.mRNA mRNA downstream 274812 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 465039 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_10453630_10483241.mRNA mRNA downstream 490688 10453613 ~ 10484006 (-) False CI01000006_10453630_10483241
CI01000006_10402704_10447782.mRNA mRNA downstream 525593 10402695 ~ 10449101 (-) True CI01000006_10402704_10447782
CI01000006_10372387_10387314.mRNA mRNA downstream 587092 10372129 ~ 10387602 (-) True CI01000006_10372387_10387314
CI01000006_11320839_11338355.mRNA mRNA upstream 331659 11320462 ~ 11338355 (-) True CI01000006_11320839_11338355
CI01000006_11388077_11391485.mRNA mRNA upstream 398691 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11459706_11462546.mRNA mRNA upstream 470485 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11530728_11535297.mRNA mRNA upstream 541563 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 606836 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
TU53918 other downstream 486259 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3463738 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 3997822 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54208 other upstream 42108 11030911 ~ 11033127 (-) True G47658
TU54279 other upstream 661560 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 1345606 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 1357389 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 1357456 12346259 ~ 12346649 (-) True G48451

Expression Profile