RNA id: CI01000012_04514814_04539220.mRNA


Basic Information

Item Value
RNA id CI01000012_04514814_04539220.mRNA
length 2449
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000012_04514814_04539220
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4514814 ~ 4539599 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTTGAGTTGTTTCCAAGGAAACCATCCTGCTCATGCAGTACAGAGGTCCATGTGGGTGTGTGTGAATGTGTGTTTCTGTGCTTACAAGTCACTCCTGAGGCGGTGGGCTTCCTGTCGGCTGTGGGCATCTTTGTTGTCTTGCTGGCCATACTCTTCCTCTTCATTAATAAGAAGCTTTGTTTTGCTCGTGTTGGAGGTCTGCCCTGCCTCGAGCAGTACAGCCGGCGTAAACGAAGAGACCGTGCTGGGATTCACCAAGGACTGGACATTCCTCAGGCAGGTATCCCAGCATTCTCTTCATGGCTCACTCAGATTTCAGACGCTTTCTCCAGTGGTTTCCGCCGCCTCGGCCAAAACGAAGCTGTTTACTCTGAGGTCTCAGTGAAAGATGAGAGTTCAGAAGTGGAGCAGAACTTGAGGCTTGTTCATGGATCTGGAGTGGATGTATCCTCCATGGATCCACAGGAAACGGTGCTGCGAGGTCAGGGCGACAGGTTTGATTATGTCCCCTCTGTTGAACGTCTGACCCCTATCAGCGAGCGGACAGAAGAACTGGAGAGCAGGAGGAGTCTGCAGGCATCACGCTGCTCTGATGTTGTGAATAGTTACGGCGATGATGGTGAGATTTCCAGCTCATCAGACAGCGATGATGAGTTGGCAAAGCAGTTTGAGATCTCCGTTTCCCGCTCACAAAGCTTCCGTTCAGGGGTTACGGAGCTCAACACCCAGATTGCACCAGGGCCACATCACAAATTTAAACGTCTGCTGCCTGACCAGGAAGAAGGAAGCACAGAGCCGTCTGACTGTGAAGAAGCTGAGAGAAACAGTGTGCAGAGTTTTCAAGATCCCCTCTCATCCAGGCGATGTGTACGGTCTGAGCCGAGAGACCCCTTATCACAGAGTCCTCTTCCTGAGGGCCAAACCCCCACAGACCCCCTCTCTCTGATGGCGGAGCAGATTTCTGTGGGCTCCCAGGACACAGGAGACGGTCTGGAGGCTCTACCCAGGGATGAGGGCAGTCGTCTGGGCAGCATGGGGCGGCAAACCCCACAGAGGAGTCTGGCAGTTGACAATCAAGGTTATGACAACAGTGAGGCTACGGATAGTTTCTCTACATGGAGCCCTGAGCATGAACAATCTCCGTCCCACCCTTTGAGCTCTTCTCCTCGTGGGCACATCTCAAAATGTGGTGACCTCATAATTGCCCTCGACTACCGGGCTGAAACCCACAGGCTTCTGGTCACCGTGATATGGGCCCAAGACATTCCAGACAAGGCGCGGAGTGGTATGGACTCCTGGATGGTGCATGTGGTGCTGTTACCTGGGAAACGGCAGAGGCACAAGACGGCCGTGCAGAAAGGCTCCATGCCCAGATTCGAGGAGACGTTCCGGTTTTCACATCTAGAGCCAGGGGATTTGGGTTCCTCTGCGCTACGGTTTCGCCTGTACGCGCTGGGGAAGATGAACAGGGAGAGGATGATGGGAGAGGCCATATACAGACTGAGCAGGCTGAAACACACAGGCAGGTTCGAGATCACACTGTTGCTGGAGCCACGCAGTAATCTCAAGACAATAGACTCCCAGGTGTCTTTCAGCGCACAGAGTGACAGTGCTTCCTCCAGTCAGTCTGTGTCTCACGGTGGAAATCCAGAACTACTGCTGGGATTATCGTACAACGCCACCACAGGACGACTGTCTGTGGAGATCATTAAAGGCAGCCACTTCCGTAACTTCGCACTCAACAGACCTCCAGACACGTTTGGTAAGCTCTCGCTGTTGAACTCTATGGGACAGGAGATATCCCGCTGTAAGACATCCATCCGTCGCAGTCAGCCGAATCCGGTCTTCAAGGAGACGTTTGTCTTCCAGGTGGCGCTGTTCCAACTGTCCGATGTCACATTAATGGTCTCCATTTACAATCGGCGGAATATGAAACGCAAGGAGATGATTGGCTGGGTGGCTCTGGGCCAGAACAGCAGCGGTGAGGAGGAACTTCTTCACTGGCAGGACATGAAGGAGGGCGGAAACCAACAGGTCTGCCGCTGGCACACACTACTGGAGGCTTAGAGGAGAGAGATAGAAATATAATCACTCGTACTGAACTGTGTTCAGCTGGAAATTCCTTTAGGAAGGAGGAGACAGCCAAGGCCAAAAATACCCACAAAAAACGGGAATGAGCAAGCAACTTTTAACACTATCAAACAAAGATAAGGCATGTATTTATGAAAATCTTGGAAGCACAAAGAAACACCCACGCCACACCACTCTTCTTCTCCCTGAAAGTACTTAATGCAGCCTCTTATCTGGTACCCAGGAAATGACATCATGGCGTAATATACGGACTACTCTATTTAACCCCAGCAGCAACCATTCAAAACGTATTATTGCCCGAGCCACCGTGATTGCCGCCTAGTGATTTAATGAATGGAGGATTGATTTGAAATGA

Function

GO:

id name namespace
GO:0006906 vesicle fusion biological_process

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81218 lncRNA upstream 9330 4481638 ~ 4505484 (+) True G71238
TU81357 lncRNA upstream 167434 4346804 ~ 4347380 (+) True G71375
TU81287 lncRNA upstream 275408 4239125 ~ 4239406 (+) True G71305
TU81127 lncRNA upstream 404538 4109941 ~ 4110276 (+) True G71158
TU81125 lncRNA upstream 407692 4106835 ~ 4107122 (+) True G71156
TU81195 lncRNA downstream 5265 4544864 ~ 4547096 (+) True G71215
TU81424 lncRNA downstream 101938 4641537 ~ 4641848 (+) True G71442
TU81188 lncRNA downstream 166957 4706556 ~ 4710923 (+) True G71208
TU81460 lncRNA downstream 251057 4790656 ~ 4790866 (+) True G71478
TU81217 lncRNA downstream 252939 4792538 ~ 4850513 (+) True G71237
CI01000012_04495631_04501066.mRNA mRNA upstream 13748 4495631 ~ 4501066 (+) False CI01000012_04495631_04501066
CI01000012_04488201_04489863.mRNA mRNA upstream 24917 4488201 ~ 4489897 (+) True CI01000012_04488201_04489863
CI01000012_04436374_04437448.mRNA mRNA upstream 77215 4435280 ~ 4437599 (+) True CI01000012_04436374_04437448
CI01000012_04424569_04425090.mRNA mRNA upstream 89058 4424569 ~ 4425756 (+) False CI01000012_04424569_04425090
CI01000012_04386557_04402516.mRNA mRNA upstream 111839 4386203 ~ 4402975 (+) True CI01000012_04386557_04402516
CI01000012_04551570_04571150.mRNA mRNA downstream 11971 4551570 ~ 4571339 (+) False CI01000012_04551570_04571150
CI01000012_04578508_04582452.mRNA mRNA downstream 37396 4576995 ~ 4582610 (+) True CI01000012_04578508_04582452
CI01000012_04595199_04620295.mRNA mRNA downstream 54268 4593867 ~ 4620453 (+) True CI01000012_04595199_04620295
CI01000012_04647182_04692241.mRNA mRNA downstream 107583 4647182 ~ 4692476 (+) True CI01000012_04647182_04692241
CI01000012_04722087_04836261.mRNA mRNA downstream 182488 4722087 ~ 4837574 (+) True CI01000012_04722087_04836261
TU81162 other upstream 14725 4498453 ~ 4500089 (+) True CI01000012_04495631_04501066
TU81174 other upstream 89167 4420239 ~ 4420494 (+) True G71194
TU79850 other upstream 1883429 2622478 ~ 2631385 (+) True G70029
TU78809 other upstream 2816578 1697400 ~ 1698236 (+) True CI01000012_01698932_01719811
TU78309 other upstream 3829958 683523 ~ 684856 (+) False G68725
TU81129 other downstream 637296 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81130 other downstream 637296 5176895 ~ 5180970 (+) False CI01000012_05177587_05180517
TU81131 other downstream 637296 5178778 ~ 5179220 (+) True G71159
TU81132 other downstream 637296 5176895 ~ 5180970 (+) True CI01000012_05177587_05180517
TU81179 other downstream 873651 5413250 ~ 5416785 (+) True G71199

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013137 True 494 mRNA 0.53 2 NC_007124.7 37543498 ~ 37545487 (-)