RNA id: CI01000012_10119912_10169990.mRNA


Basic Information

Item Value
RNA id CI01000012_10119912_10169990.mRNA
length 3795
RNA type mRNA
GC content 0.53
exon number 19
gene id CI01000012_10119912_10169990
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10119912 ~ 10169990 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGTACACACTGACAAGGTGAGCCCACTGAAGGAAAAGTCTGCCGCTGCAGAGAACGGATCTGTCCACACTGATTCAGTCACTGCGGAGCCACAGGTGTCTGCTGACGAGGAAGAAAAGCCACAGAGACAGGAAGAGGAGGATAAAGAGGAGCTAGAGTTTCCTCATGATCTGCTGCCCAGCATAGACCTCGACCTCAGCACTGAGCTCAATCTCACCTGGGGAACCTCACTTGGACCATTTGAAACCCTTGGTTCGCCTCAGGCTGAACTAGAATTCCGAACCCCAACTGAGGAATATTTCCCCCCTGCTACTGATGAGAGTTTCCCCCCTGCTCCTGAGAAGAAGAATTTCCCCCCTGCGCCTGAGGAGAGTTTCCCCCCTGCACCTGAGGAGAGTTTCCCCCCTGCGCCTGAGGAAAGTTTCCCCCCTGTGCCTGAGGAGAGTTTCCCCCCTGTGCCTGAGGAAAGTTTCCCCCCTGCGCCTGAGGAGAGTTTCCCCCCTGCACCTGAGGAGAGTTTCCCCCCTGTTACTGAGCAGCCAGAAGAACAAGAAGACTGCAGGTCCCCTCTGATAAAAGCTGCTGAGAGGAGTGAGCCTGTCCCCTCTCCCTCATCACCCCCACCACAGCACAGCACTGCTCCTGCCCTCCCTGCCCACCTGCTGCAGGACACAGTCGAGTTCCCCACACCACCCCCTACCCCTCCAGACAGGGCTCCCTCTGAGCCTCAGACCCTTCCTCCTGCTGCTGCTCCTTCTGATCTACCCGAGACTCCCCCTGCTGTCATTCTGCCTCCTCAAATCCAACAGCTTCAGCACTCTGAACCTTCAGCAAGGAGCTCAGACTCAGACGGAGCTTTCGAAACCCCTGAGTCCACCACCCCTGTGAAGTCTGCTTCCCCACCAGTGCCCCCAACAGAGCCCCCCTGTACCAGCTCAGAGGCATTGTCCCCAGAACACACAGCTTCCACTGCTGACATATCTGCCAGTGAAGCTCAAGTCCCAGCAGTACTTCAACCTCCCAGCCGCTCTCCATCTACAGTCTTTGATGAGGACAAACCAATAGCTGCTAGCGGCACCTACAACCTAGATCACTTAATCACTGATGACCCCTTCCCAGAATCAAATTTTGGGTCTGGACCATCAAGCCGAGCGCCTCTCACCCGCTCTCTAAGCCTACAGTCTGGTGAGTTAGAGAGCCCGGGAGACAAATCTTCAGGAGGAACCTCCGACAAACCCATTCACCCACGAACAGAGTCCTTCAGCATAGGAACAGAGAGTGCTCCGGGAACCCTTCATAGAGTGAAGAAGCCCCGTCCAGGTTCACTAAAGAAGAAGCCTCTTTCCAGGCAGAACTCAAACCCAGAGCGTTCCTCTCCCAAAACTGTGTCCTCTAGCAGCACACCGGAAGAGAATAAGAGAGGGAAACCCCATCCCGAAAGCCCCTTGCAAACCCAAGAGAGGCCTAGTTCCTCTCCCAGCCCTAGTCCTAGTCCTGCTGGTACCCTACGGAGAAACAGAATAAAGTCTCGAGTTGAGAGTCCTCCACCTTTGGCTGAGGAGATCACTATTGCCTCAATATCAACTCAACTCCAGCAAGAGCTTCCTGATCCAGTACCCGAGGCTCCCACTGTCCCAGACGAGGAATCTCCTATTCCTCCCAGCGCCTCCTACAAATGGGATCCGGACAACTTTGAGAACATTGACCCATTCCGTACAGGAGGCAGTAAAGTGGCAAACTCGCCGGTCTTAGGCCGGAAAGCAGACTTTACATTGGTTTCAGGCACCCCTGTTGCTGTAGAGGAGCCCCGTGCCCCTTCCCCTGCTAAAGAGCAACCCCTCAACATTGAGGAACAACCAGTCGGCAAGCGTCAACCAGTCAGACTGGAGTTTGACTATTCAGAGGACAGCGGAGAGGCGCCGCGCAGTACTCCTCCTCCCAAAATCCTGGGCAAGAAACCAGGAGCCAAGATGCCCATTCGAAAGCCAAAACTGGGGATTAAGAAGGCCCCTCCTCCCCAGACAGAACAGATAGACAATGCACCTGTCCCAGCACTTTCAAATGACAATGATGATATCCCGATCCCCAAGGCGTCATATAACTTTGACCCCAGCAAGTGGGATGACCCTAACTTTAATCCATTTTCCTCAAGCAGTGGTATCCCAAACTCTCCTCGACTGTCTAAAGGATCCTACAGCTTTGATCCTGACTCCTTTGATGATTCAATCGATCCCTTCAAATCATCTAACAATATGAACCCGCCTCAGAAAGCTGCCACTTTTGACCAGTCCAACAATGACAACGAGAATGACAATGATAACATTGTTGAGTTAGAGGATCACAACCAGAACAAACCTGCCAAAAACAAGAAGAAGCCTCTTAAATCTAACACTTTTAGAGTAAAGAAGTCTCCAAAGAGGACTCAGATTACTGAGCCATCTGCACAAGAACACTCGCCCGATGCCAATCCCGACCCTTCACAAGATCACGCCACAGATGAGGAGAAACTGGCTTCCTCCACCAATCAGAAATGGACTAGACATGACGTGGAGGTGGAGCTTACCTCTGACCCCCAAGACTTCCCGCAGCCGACAGACTTCACAGCTTTTGTCAACGAGAACAGTTTGCCTGCACAGAGTGACGTTACAGATTATGAGATTGAATACATGGAAAAGATTGGCTCCTCTGCACCTCCTCTCTCGGTGAAGAAACCATCACTTTATCTGAAACTGGACTCAGTGACAGACAGTCCAAAGAAGACCTCCAACATGCACGATTCAGAGCCCAACTCCCCCTGCACTGGGAGCTTTGAGGAGATGGAGGCTCAGATCTCACAGGGGAAATCACCTGTGCTGCCACCACGTGGCGCTCGCGAACCCATGGCCTCAGAGAAAAGCAGAAAGAGGGACAGTCAGTCTCAGAGTCGAACGCAGAGCACCGAGAGAGATGGAGCGTCCCCCATCCAGGGCCCCATGGACCCCTCAGATCTGCCCCTCTTAGACAGGCTGTCTGATTCTCCTGCCCCTCTCAGCTACCTGGAGCCTGATCTGGCAGAGACCAACCCCACTGCCTTCGCTCAAAAACTGCAGGTAGAAATGGCCTCACCGGGGGACAGTGGCGTTTTGAAGAGCTCCCTCTATTCCCGAGCAACATACATTGAAGGAGAAAGCCCTCATCTGCCACGTGACATGGACCACTCTCTGGTCATCGCCCGAGAAGAGGTTGTTTTGAAAGAGAAAGAAGCCATGGAGTGGAAGAGAAAATATGAGGAGAGTAGACAGGAGGTAGAAGAGATGAGGAGGATAGTTATGGAGTATGAGAAGACCATTGCAGAGATGATCGAGGGTGAACAGAGGGAGAAGACTTTGTCTCATCACACTATTCAACAGTTGATCCTGGAGAAAGACCAGGCTTTAGCTGATCTCAACTCTGTGGAGAAATCTCTTGCTGACTTGTTCCGGCGCTACGAGAAGATGAAAGATGTTTTGGAAGGCTTCCGCAAAAATGAGGATGTGCTGAAGAAATGTGCGCAGGAGTACCTGTCTCGTGTCCGTAAGGAGGAGCAGCGCTACCAGGCCTTGAAGATCCACGCTGAGGAGAAACTGGATAAGGCGAACGCTGAAATCGCTCAGGTGAGAGCCAAAGCCAAGCAGGAGCAGGCAGCGTATCAGGCCAGTCTGAGGAAAGAACAGATGAAGGTGGACTCACTGGAGCGCACACTGGAACAAAAGAACAAAGAGATTGAGGAACTGACCAAAATTTGTGATGAACTGATTGCCAAGATGGGGAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86327 lncRNA downstream 29694 10090005 ~ 10090218 (-) True G75648
TU86326 lncRNA downstream 30639 10089056 ~ 10089273 (-) True G75647
TU86325 lncRNA downstream 33400 10086275 ~ 10086512 (-) True G75646
TU86324 lncRNA downstream 33651 10085951 ~ 10086261 (-) True G75645
TU85809 lncRNA downstream 132227 9987365 ~ 9987685 (-) True G75230
TU86309 lncRNA upstream 9139 10179129 ~ 10179830 (-) True G75630
TU86340 lncRNA upstream 83130 10253120 ~ 10253362 (-) True G75661
TU86232 lncRNA upstream 123856 10293846 ~ 10295724 (-) False G75597
TU86230 lncRNA upstream 124169 10294159 ~ 10295667 (-) False G75597
TU86231 lncRNA upstream 124169 10294159 ~ 10295724 (-) True G75597
CI01000012_10114837_10117992.mRNA mRNA downstream 621 10114396 ~ 10119291 (-) True CI01000012_10114837_10117992
CI01000012_09984871_10009730.mRNA mRNA downstream 110027 9984306 ~ 10009885 (-) True CI01000012_09984871_10009730
CI01000012_09976030_09976302.mRNA mRNA downstream 143545 9975571 ~ 9976367 (-) True CI01000012_09976030_09976302
CI01000012_09974294_09974754.mRNA mRNA downstream 144856 9973339 ~ 9975056 (-) True CI01000012_09974294_09974754
CI01000012_09926268_09941904.mRNA mRNA downstream 177518 9926073 ~ 9942394 (-) True CI01000012_09926268_09941904
CI01000012_10189922_10194006.mRNA mRNA upstream 19886 10189876 ~ 10194006 (-) True CI01000012_10189922_10194006
CI01000012_10201667_10213604.mRNA mRNA upstream 31407 10201397 ~ 10213604 (-) True CI01000012_10201667_10213604
CI01000012_10217709_10222035.mRNA mRNA upstream 47218 10217208 ~ 10222035 (-) True CI01000012_10217709_10222035
CI01000012_10240747_10243942.mRNA mRNA upstream 70445 10240435 ~ 10243942 (-) True CI01000012_10240747_10243942
CI01000012_10255038_10257789.mRNA mRNA upstream 84910 10254900 ~ 10257802 (-) True CI01000012_10255038_10257789
TU85530 other downstream 543940 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 543988 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 717944 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 1036423 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 1046455 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 441925 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 441925 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 1879054 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1908946 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1908946 12080546 ~ 12083845 (-) True G77017

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011918 False 6736 mRNA 0.45 18 NC_007124.7 28819768 ~ 28902920 (+)