RNA id: TU86281


Basic Information

Item Value
RNA id TU86281
length 1502
RNA type TUCP
GC content 0.47
exon number 2
gene id G75608
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10611915 ~ 10620871 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACGACCCTCTTTAAAAGCAAAAAAAAAAAAAAAAAAAATGAGAAGATAACTTTACAATAAATGCGTCTTTAGACAAAATGATCACACAATAGTTCATGGCTATTCACTGTTTAATGCACGGAAATAACAATATTCTGTCTCTGTACTAGGCACCAGAAAATGTAAACACATTATAGAAATAAACCTGGATGACACGGTGGGGATGTTTAAATTATTGCACAGCAGAGAGACCCTGTCTGAGAGGATAGAAGCTCTGCTACGGCGGCGGGACTGACGTGTTCGACTGCACGCTTTTGTTCGCTCAAAATCAGCTGGCTTAAAACGACAATTCCTTCCCTGAGCCCCTTTCTATTGACCCCAAACCCCCCTTATTCCGTTAGCCGTCACAGCTGTACAGTCGTCCAGGTTTATTTGTCTTTCACTCACTGTGCTTCTCTGTAACGCACACATTAAAACATCACAGTAAAGATGGAGTTTGTCATGGAGCTACACAGATGCGGTGGGGTGAGAGGCCAGAGAGAGGGGGCGAGGGGTTCATCTATCTTATGATTACAATACATTACATGGGTCTATACAATATCTGCTACAGGGTTCTGGGACATGGGGCTACAGAAGATAGGAAAAGGAGGGGGATGTCACAAATATGATAGCCATAACTCTGTCTTTTAAATACTATGACTCACTATTTGGTAAAGATATATTAGAAGCCTATATAATTGGTCCAGCAGCTTTCTTGTAGCTGATATGTGATTTGAACCCCCCAAAAATATATATATATATATATATATAGAAGAAAAAAATAATTGCAAATAAGACGGTCAAAGCTGCCAGTCTCTTACACGCCATACTCTCGCTCACTTGATGAATAAACAGAGGGCAGGTTGAATCGATGCTCTCCAGAGTAGTAATAGTTGGAAAGAGAAAGGGGAAAAAAATGACAGTACATGAATAAAACTCTGGGTGCGAGTGGTGGTGGAGGAGGAGAGGAGAGATGAAGGGATGTGGTGCCCCTTGTGCTCCATCGTCCCTCATTCATTTACTTCCAGAGCTGGGTGCTGAGGGTCTGACCAGAGGGGGGTGCCACCCAGCCGCCCATGGGGGCACCAGGTGGCCCAAATGCCATCGGAGCACCGGAACCGTTCAGGTTTATTCCAGACATCTGTTGGTTAATCTGAAAAAGACAAGGCTGTGCCATATTCCACTGTCCTTGCTGACCTGGCTGCATGGCATACATGTTTTGAGGGGGCACCATGCCCTGAGGTCCCATCATGCCTGGAGCCAAGCCCATCACCCCTGGCTGTGCGTTTCCCATGAAACCGTTAGGCATCGTCATACCAACCATCATGCCGGTATTCTGGCCCATCATAGCGCCACCCTGGCCCATGACAGCCCCCATCATGGTAGTGGGCGGCATGGCTCCTCCCATCCCTGGGAAAGCCTGGAAGTTCCCCTGTGGCTGCGCGGGGAACTGCATCTGAGACGGGCCCATGAACATCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86431 lncRNA downstream 60695 10550070 ~ 10551220 (-) True G75751
TU86247 lncRNA downstream 110839 10490985 ~ 10501076 (-) True G75601
TU86357 lncRNA downstream 248727 10357341 ~ 10363188 (-) True CI01000012_10358145_10364166
TU86355 lncRNA downstream 256145 10355501 ~ 10355770 (-) True G75676
TU86354 lncRNA downstream 256444 10355244 ~ 10355471 (-) True G75675
TU86285 lncRNA upstream 66978 10696564 ~ 10696675 (-) True G75609
TU86287 lncRNA upstream 66978 10687849 ~ 10703783 (-) False G75609
TU86482 lncRNA upstream 93227 10714098 ~ 10764080 (-) False G75796
TU86481 lncRNA upstream 115850 10736721 ~ 10764080 (-) True G75796
TU86273 lncRNA upstream 143292 10764163 ~ 10791209 (-) True G75607
CI01000012_10395715_10408849.mRNA mRNA downstream 203066 10395628 ~ 10408849 (-) True CI01000012_10395715_10408849
CI01000012_10358145_10364166.mRNA mRNA downstream 247749 10357356 ~ 10364166 (-) False CI01000012_10358145_10364166
CI01000012_10322141_10348992.mRNA mRNA downstream 262923 10322141 ~ 10348992 (-) True CI01000012_10322141_10348992
CI01000012_10303346_10315263.mRNA mRNA downstream 296015 10303163 ~ 10315900 (-) True CI01000012_10303346_10315263
CI01000012_10276814_10291389.mRNA mRNA downstream 319712 10276259 ~ 10292203 (-) True CI01000012_10276814_10291389
CI01000012_10626417_10638842.mRNA mRNA upstream 5018 10625889 ~ 10638963 (-) True CI01000012_10626417_10638842
CI01000012_10639383_10640319.mRNA mRNA upstream 18290 10639161 ~ 10640848 (-) True CI01000012_10639383_10640319
CI01000012_10696109_10703071.mRNA mRNA upstream 74885 10695756 ~ 10703186 (-) False CI01000012_10696109_10703071
CI01000012_10705713_10710443.mRNA mRNA upstream 84842 10705713 ~ 10710443 (-) True CI01000012_10705713_10710443
CI01000012_10799203_10801485.mRNA mRNA upstream 177907 10798778 ~ 10801537 (-) True CI01000012_10799203_10801485
TU85530 other downstream 1035943 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1035991 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1209947 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 1528426 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 1538458 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU87807 other upstream 1428173 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 1458065 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 1458065 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 2333575 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2998405 13619276 ~ 13633819 (-) True G77287

Expression Profile