RNA id: TU87843


Basic Information

Item Value
RNA id TU87843
length 556
RNA type TUCP
GC content 0.46
exon number 5
gene id G77017
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12080546 ~ 12083845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGAGAGAAGTCATCGGCACCATTACGTGGAGGCAGGGCTGCAAGAAAAGGCGACAGGAAACACACAGGAATCTCATCACTTTGTCTGGAAAATGCATTTTATCCTTTGTGTATTTGCAGCGGAGAAGCCAGACCAGATGGTGTGAGAAAGACACAGCTTTGAATGTGCTGCACTCACAAGCTTTCGCTCTGACGGCTGTATGCCACTGCTCTTCCTCTTTCTTTGTTACGGGGAAAACGGTTGATTGTAACGTGAGGGCGATAATCTTGAGCGAGAAGACTAAAGGAGAGTGGATGACGGCAGCAAAGGAAGGGAGAGGTGAAAAATGAAAAAAGCCAGTGACAACAACTTCACGTCAAGCGGAGAAAACAGAATCGCCCTGCCTCCCTCCATATGCCAGTGAAGAGCTGCTGGGTGATCATAATGTGTTAACCAGAGGCGCTGAAGATTCAAAGCCGTGTTTTTGTGGTAGGAGTTTTGGAAGTGTAAAACTTGTATTATTCATCTGGTTTTGAGTGAGGGGATCAGCCCACTCCTTTGGCCCGGTTTCAACACTGTCTCCTTGGACACAAGTTGCTGGATCGTTTGGTATTGTGGAGAGATCTAGCACCTATCCAGTGGTGTAACGCATGCCTATGTGACGCAAACTAACAGATTACAGACAAGTTGTGCAAAATGACCACAGACATTACCGGTCGTCTTCCACTCAATGTCTATGTCATCATTCTTGGGATAGGCCTCTTCATCTTCATGTTGAGCATGATCTTCTGTTGCTACCTGTTCAGACTGAGGCGACAGGGCACACAAGAACAATATGGATATAATGAGGTCGTTCTAAAAGGTCCAGGGAAAAAATTGAGTCTTCTTGGACAGACCTGTGCAGTTTGCCTGGAAGAGTTTCGGAGCCGGGATGAACTAGGGGTTTGCCCTTGTTCTCATGCGTTTCACAAGAAGTGTCTGGTGAAGTGGCTGGAAATTCGCAGCGTCTGCCCCATGTGCAACAAGCCCATCTGCAGGCTCCAGCCAGACCCTCTGCAGGGGGCAGAGGGGCCCCAGAACCCCCTGGAGGTGTGACAGAAGAGGGACATCGCTGCTCAGAGATAGGCAGGCTCTCACACACCTAAGAACAGCGTTAAAAATCACCACACTACTGGAGCAGACGGACTAGTCCCAAATACACATCCACCACCCCTGTCCACCAATCACCAGATTTCTCCTGCATAGATGGGGGGAGGGAAGGGAAGTGGGATTTTCCCAGTGGAACTGAACTGATGTGCCGTGTTCTTGGTCATAATGTAGCTTGCATCAAGATAAATTGATGCCTTGTGGAGATGCACAAAACATGAGGTCTGAGTTGACACTGTGCAATATGTGCAAGCATACAGTAGTACCCGTCTAAGGGAGACTGTGGTCACTATTAATACCATAAAGAGTAAAGTTTAGGAATGCCTAGTTACAGAATCCAAAGTTAGGAGCCTGAGTCCTGACCTTAAGGATCTGTGAGCTCATCGTTTTTTACTCTTGCCAATATTTTGACATTTGACACTCATAAATGTGTTTCTTTAGAGTGTTCTGAGTGCTAAAGGGAGCTCATAGTCTTGATGAGAACCCATGCTGTAATCCAGAACCCTCAGATTTAGATGGAATTTGGCCTAATTTAAGTTATTTAAGGTGGATGTTTTGTACTATATTTGGCTCTCAATAAAATGTAAAGTTTCT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87837 lncRNA downstream 13961 12064562 ~ 12064975 (-) True G77014
TU87784 lncRNA downstream 132407 11945062 ~ 11946529 (-) True G76966
TU87773 lncRNA downstream 174201 11904512 ~ 11904735 (-) True G76956
TU87731 lncRNA downstream 178555 11897330 ~ 11900381 (-) True G76914
TU87768 lncRNA downstream 193259 11885447 ~ 11885677 (-) True G76951
TU87817 lncRNA upstream 568106 12652366 ~ 12665651 (-) True G76994
TU87974 lncRNA upstream 621079 12705339 ~ 12705552 (-) True G77128
TU87980 lncRNA upstream 634686 12718946 ~ 12719187 (-) True G77134
TU87995 lncRNA upstream 696500 12780760 ~ 12781057 (-) True G77149
TU87805 lncRNA upstream 814095 12898355 ~ 12899359 (-) True G76982
CI01000012_12072222_12072632.mRNA mRNA downstream 6163 12071800 ~ 12072773 (-) True CI01000012_12072222_12072632
CI01000012_12061993_12069118.mRNA mRNA downstream 9757 12061185 ~ 12069179 (-) True CI01000012_12061993_12069118
CI01000012_12047175_12052116.mRNA mRNA downstream 26395 12046728 ~ 12052541 (-) False CI01000012_12047175_12052116
CI01000012_12028095_12043862.mRNA mRNA downstream 35074 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
CI01000012_12007476_12016114.mRNA mRNA downstream 62822 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12087234_12088283.mRNA mRNA upstream 2644 12086904 ~ 12088924 (-) True CI01000012_12087234_12088283
CI01000012_12108309_12112818.mRNA mRNA upstream 24049 12108309 ~ 12112818 (-) True CI01000012_12108309_12112818
CI01000012_12117231_12121038.mRNA mRNA upstream 32784 12117044 ~ 12121173 (-) True CI01000012_12117231_12121038
CI01000012_12122967_12124124.mRNA mRNA upstream 38644 12122904 ~ 12125354 (-) True CI01000012_12122967_12124124
CI01000012_12132327_12133572.mRNA mRNA upstream 47928 12132188 ~ 12133572 (-) True CI01000012_12132327_12133572
TU87807 other downstream 26729 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 1458065 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1458065 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2502964 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2503012 9575648 ~ 9575924 (-) False G74982
TU87800 other upstream 870186 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1535016 13619276 ~ 13633819 (-) True G77287

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011846 False 3570 mRNA 0.42 7 NC_007124.7 25428677 ~ 25438298 (+)
bowfin (Amia calva) TU178899 True 2200 lncRNA 0.46 5 CM030139.1 19618881 ~ 19633073 (+)
mexican tetra (Astyanax mexicanus) TU178899 True 530 lncRNA 0.55 1 NC_035911.1 15668208 ~ 15668737 (+)