RNA id: TU87773


Basic Information

Item Value
RNA id TU87773
length 224
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G76956
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11904512 ~ 11904735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAACGTTAATTTCTTAGGTTAAAAAAAAACCAATCAAATTCATTCAGTGTCACAAACTATTTCCTTCTCACTGCTCCTAATGTGTGTGCACTAAATTGGATGGGTTAAATGCAGACAGAGGACAAATTCCGAGTATGGGTTTAGCATACTTGGCCTTCACGTCACTTCAATTTCGTTAACAAGGTCACAAGTGAGCCATATTATCATTATGCTTGGTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87731 lncRNA downstream 4131 11897330 ~ 11900381 (-) True G76914
TU87768 lncRNA downstream 18835 11885447 ~ 11885677 (-) True G76951
TU87766 lncRNA downstream 33499 11870492 ~ 11871013 (-) True G76949
TU87763 lncRNA downstream 44949 11859362 ~ 11859563 (-) True G76946
TU87755 lncRNA downstream 121283 11783026 ~ 11783229 (-) True G76938
TU87784 lncRNA upstream 40327 11945062 ~ 11946529 (-) True G76966
TU87837 lncRNA upstream 159827 12064562 ~ 12064975 (-) True G77014
TU87817 lncRNA upstream 747631 12652366 ~ 12665651 (-) True G76994
TU87974 lncRNA upstream 800604 12705339 ~ 12705552 (-) True G77128
TU87980 lncRNA upstream 814211 12718946 ~ 12719187 (-) True G77134
CI01000012_11799629_11846842.mRNA mRNA downstream 57670 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11585774_11608639.mRNA mRNA downstream 295537 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11292683_11315522.mRNA mRNA downstream 588494 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 814320 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 833183 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11905259_11905909.mRNA mRNA upstream 421 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 20264 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 102682 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 123176 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
CI01000012_12047175_12052116.mRNA mRNA upstream 141993 12046728 ~ 12052541 (-) False CI01000012_12047175_12052116
TU86281 other downstream 1283641 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1283641 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2328540 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2328588 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2502544 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 144309 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 174201 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 174201 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1049711 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1714541 13619276 ~ 13633819 (-) True G77287

Expression Profile