RNA id: TU87974


Basic Information

Item Value
RNA id TU87974
length 214
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G77128
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12705339 ~ 12705552 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAATCCTCCTGGATCTTGTCTTGCTGTGTCATAATATTCCTCTCATATAGCCTACACACAGACATAGGCTTTTTTAACTTTATCCTGCATGTAGAAATATATAGAAGTTTTAGCCTTAGAGTGAAAAAAAAGTTTGTGTTAACTAATAGTTAACTAAGGTTAACAAATGGAAACTTTTTGTAAAGTGTTACCAAAAGTTGTAACATTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87817 lncRNA downstream 39688 12652366 ~ 12665651 (-) True G76994
TU87837 lncRNA downstream 640364 12064562 ~ 12064975 (-) True G77014
TU87784 lncRNA downstream 758810 11945062 ~ 11946529 (-) True G76966
TU87773 lncRNA downstream 800604 11904512 ~ 11904735 (-) True G76956
TU87731 lncRNA downstream 804958 11897330 ~ 11900381 (-) True G76914
TU87980 lncRNA upstream 13394 12718946 ~ 12719187 (-) True G77134
TU87995 lncRNA upstream 75208 12780760 ~ 12781057 (-) True G77149
TU87805 lncRNA upstream 192803 12898355 ~ 12899359 (-) True G76982
TU87797 lncRNA upstream 194862 12900414 ~ 12901677 (-) True G76975
TU88044 lncRNA upstream 203077 12908629 ~ 12908909 (-) True G77198
CI01000012_12691707_12693855.mRNA mRNA downstream 11484 12691644 ~ 12693855 (-) True CI01000012_12691707_12693855
CI01000012_12681945_12685282.mRNA mRNA downstream 20057 12681826 ~ 12685282 (-) True CI01000012_12681945_12685282
CI01000012_12675446_12678283.mRNA mRNA downstream 27056 12675311 ~ 12678283 (-) True CI01000012_12675446_12678283
CI01000012_12613737_12614861.mRNA mRNA downstream 89128 12611559 ~ 12616211 (-) True CI01000012_12613737_12614861
CI01000012_12598963_12604426.mRNA mRNA downstream 99967 12597604 ~ 12605372 (-) True CI01000012_12598963_12604426
CI01000012_12741444_12744014.mRNA mRNA upstream 35762 12741314 ~ 12744434 (-) True CI01000012_12741444_12744014
CI01000012_12745876_12748041.mRNA mRNA upstream 40029 12745581 ~ 12749149 (-) True CI01000012_12745876_12748041
CI01000012_12751670_12759821.mRNA mRNA upstream 45721 12751273 ~ 12759821 (-) True CI01000012_12751670_12759821
CI01000012_12783994_12795809.mRNA mRNA upstream 78372 12783924 ~ 12796569 (-) True CI01000012_12783994_12795809
CI01000012_12811846_12819195.mRNA mRNA upstream 106182 12811734 ~ 12819361 (-) True CI01000012_12811846_12819195
TU87842 other downstream 621079 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 621079 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 653132 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 2084468 10611915 ~ 10620871 (-) False G75608
TU87800 other upstream 248894 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 913724 13619276 ~ 13633819 (-) True G77287

Expression Profile