RNA id: TU87805


Basic Information

Item Value
RNA id TU87805
length 1005
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G76982
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12898355 ~ 12899359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCTGCAATGAAGACAAGCTGCTTTGTAGACAAAACAGTGGGGCCACTGGATTCACTGTCTGCATCCTGTGATGTGCGGCTGGATGTGGAGGAGGCGGAGCTTGGGAGCGGTCTTACCAAATCTTTGTTAGTCTCTGGAGGTGATGTTTTTGTTAGAACCTGTGAGACAAAAAAGAAATGACGTGAATAATAACCTTATCATTATGATTCATTATCTTTCTGCCAGTAATGCTTTACCTCTGTAAGAAAGGTGCCGTATCTGGAGATCAGCTGCAACGTTAGTTTCCAAAATCGATGAGCAAGTGGTGGCAGGTACACCTGGTCAGCCCAGCACCTGCACACGCAGCTCCACAACACCTCAGTAACCTGCAGGTGGTAGCTGCCGCCCGCTGATGTTCACAAAGTCAAGTCAAGTCACCTTTATTTATATAGCGCTTTTAACAATGCAGATTGTGTCAAAGCAGCTTTACAGTGATAACTGGTATATAATTTTGGCTGCACAGCAGCTCTTAAACAAAATGCTGTCATTATCCATCTTAAATAAATTCAGTATTGATTCATTCCGATGTAAGAATCAATAGTTATTAATTTAGTTAATTTATCTATATCAGCACTGGAGTAAACAGTGATATCATCCAGCTCAGTTCAGTTCGCATACAATGGTGTCAATGCAGACAGATCAAAACACTGTTGAATATCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAACACAAAGAGCAGACTGTGAGCAGTGGTGATCTGTTACTCACTCTATCGTTACAGTCACAGCTTTATTTATCATTACAAAGCAGGTCAGCAGATGAATAAAGAAGGCCACACAACATGGAGTTAATTTATGTTCATGGCACATTCATTCTTACATTAATCCAAACACATTGACTGACCTGGAGATGCCTTTAGTCCATCGGCAATGGCATTTTCTAGACTTCCAGCAATCTCCTTGAACCTAAAAAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87995 lncRNA downstream 117298 12780760 ~ 12781057 (-) True G77149
TU87980 lncRNA downstream 179168 12718946 ~ 12719187 (-) True G77134
TU87974 lncRNA downstream 192803 12705339 ~ 12705552 (-) True G77128
TU87817 lncRNA downstream 232704 12652366 ~ 12665651 (-) True G76994
TU87837 lncRNA downstream 833380 12064562 ~ 12064975 (-) True G77014
TU87797 lncRNA upstream 1055 12900414 ~ 12901677 (-) True G76975
TU88044 lncRNA upstream 9270 12908629 ~ 12908909 (-) True G77198
TU88046 lncRNA upstream 13489 12912848 ~ 12913111 (-) True G77200
TU88047 lncRNA upstream 14339 12913698 ~ 12913923 (-) True G77201
TU88048 lncRNA upstream 17072 12916431 ~ 12916673 (-) True G77202
CI01000012_12872801_12891084.mRNA mRNA downstream 7271 12871862 ~ 12891084 (-) True CI01000012_12872801_12891084
CI01000012_12811846_12819195.mRNA mRNA downstream 78994 12811734 ~ 12819361 (-) True CI01000012_12811846_12819195
CI01000012_12783994_12795809.mRNA mRNA downstream 101786 12783924 ~ 12796569 (-) True CI01000012_12783994_12795809
CI01000012_12751670_12759821.mRNA mRNA downstream 138534 12751273 ~ 12759821 (-) True CI01000012_12751670_12759821
CI01000012_12745876_12748041.mRNA mRNA downstream 149206 12745581 ~ 12749149 (-) True CI01000012_12745876_12748041
CI01000012_12902396_12904687.mRNA mRNA upstream 2802 12902161 ~ 12905621 (-) True CI01000012_12902396_12904687
CI01000012_12954694_12954954.mRNA mRNA upstream 55101 12954460 ~ 12957833 (-) False CI01000012_12954694_12954954
CI01000012_12960774_12964242.mRNA mRNA upstream 60342 12959701 ~ 12964929 (-) True CI01000012_12960774_12964242
CI01000012_12977279_12978570.mRNA mRNA upstream 77663 12977022 ~ 12978817 (-) True CI01000012_12977279_12978570
CI01000012_13015424_13018020.mRNA mRNA upstream 116015 13015374 ~ 13019645 (-) True CI01000012_13015424_13018020
TU87842 other downstream 814095 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 814095 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 846148 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 2277484 10611915 ~ 10620871 (-) False G75608
TU87800 other upstream 55087 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 719917 13619276 ~ 13633819 (-) True G77287

Expression Profile