RNA id: TU87837


Basic Information

Item Value
RNA id TU87837
length 414
lncRNA type intronic
GC content 0.30
exon number 1
gene id G77014
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12064562 ~ 12064975 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACACGGTATTAGGTTAGTCAAGTCAAGTCACATTTATTTATATAGCGCTTTATACAATACAGATTGTTTTAAAGCAGCTTTACAATGTTAAACAGGAAAATAAGGATTCATTGATGCAAAAAGAATTAAATTCTGCTTTAAATCAGTTCTAAAAAGACAGTAGTAAACAGTCATTATTCAGCTGAAATCAATTCAGTGATTCATTTGGGTTCAATAACTATAAACTACATAATTTATGAAATAAGCTCAATTTGGCTATAAAGCAGTTCTGCAGATCCAGTTAAGTTGAGTTCTCATCCAATAGGTAAATCAATATTGCTGAATATTAAGAGACAGGTTTGGGAAGGGAAGGGTCAACAGTGTAATTATAGATATATTTAAAGAAATTAATTACAGCTGTAATTACAAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA downstream 118033 11945062 ~ 11946529 (-) True G76966
TU87773 lncRNA downstream 159827 11904512 ~ 11904735 (-) True G76956
TU87731 lncRNA downstream 164181 11897330 ~ 11900381 (-) True G76914
TU87768 lncRNA downstream 178885 11885447 ~ 11885677 (-) True G76951
TU87766 lncRNA downstream 193549 11870492 ~ 11871013 (-) True G76949
TU87817 lncRNA upstream 587391 12652366 ~ 12665651 (-) True G76994
TU87974 lncRNA upstream 640364 12705339 ~ 12705552 (-) True G77128
TU87980 lncRNA upstream 653971 12718946 ~ 12719187 (-) True G77134
TU87995 lncRNA upstream 715785 12780760 ~ 12781057 (-) True G77149
TU87805 lncRNA upstream 833380 12898355 ~ 12899359 (-) True G76982
CI01000012_12047175_12052116.mRNA mRNA downstream 12021 12046728 ~ 12052541 (-) False CI01000012_12047175_12052116
CI01000012_12028095_12043862.mRNA mRNA downstream 20700 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
CI01000012_12007476_12016114.mRNA mRNA downstream 48448 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_11925364_11925971.mRNA mRNA downstream 138591 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_11905259_11905909.mRNA mRNA downstream 158318 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_12072222_12072632.mRNA mRNA upstream 6825 12071800 ~ 12072773 (-) True CI01000012_12072222_12072632
CI01000012_12079581_12084139.mRNA mRNA upstream 13974 12078949 ~ 12084139 (-) False CI01000012_12079581_12084139
CI01000012_12087234_12088283.mRNA mRNA upstream 21929 12086904 ~ 12088924 (-) True CI01000012_12087234_12088283
CI01000012_12108309_12112818.mRNA mRNA upstream 43334 12108309 ~ 12112818 (-) True CI01000012_12108309_12112818
CI01000012_12117231_12121038.mRNA mRNA upstream 52069 12117044 ~ 12121173 (-) True CI01000012_12117231_12121038
TU87807 other downstream 12355 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 1443691 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1443691 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2488590 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2488638 9575648 ~ 9575924 (-) False G74982
TU87842 other upstream 13961 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 13961 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 889471 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1554301 13619276 ~ 13633819 (-) True G77287

Expression Profile