CI01000012_12087234_12088283 (CALHM2)


Basic Information

Item Value
gene id CI01000012_12087234_12088283
gene name CALHM2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12086904 ~ 12088924 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12087234_12088283.mRNA
TGACTTAATGACTTGTTTTGCTGGATGTGAGGAGGTCATTTGATTCACGTTGCCCAGCCTGTTTTAGTTAAATGCTCATACTTTCCACTGGGGCTGGAACCAGATGTGGTTCCTGCTGATGATTCAGCGCTGCACACAACAGTCAGAGCGAAGGAGGGATTTCACTACTTCCACACAACATGAGCTACATATAGAAATTTCATTTGTTTTAAAGACTTCTTTTGCTGTCTGAATTTGGTTGTACATATTTGTAAAACTTTATGGATATTCAGCAAGACCATTTGTAATTCATTGCAATGGAATGTAAGTCTTTCTGTTTCTGTATGGTTTTCAGTTACTACTTTAGGCTCAAAACATCAAGCTGAGACTTGCCCAAAGGGAATTTGTTGGAAGAGCTTTTGTGCATGAAATCATTCTTTGAATCTAATGTGTATCTCATAATATTCTGAAGTGTACACATGCATATTTCTTTGTGTCTCTGTTTATTTTGAGTTTTGTGTCTGTTTGTTATGTTGTTGTATGATGGTGTCAGATGGTGTCAGAACTCATTCACTCATCTGACTTTGTCTGTGTTTTCGGTTTGATTTACAGACTATCTGAAAGATTTTGTTTAATCGCCATTAATTCACATTCAGGACAAGATGGCTTCTCTCATCTCAGAAAACTTCAAATTTATTGCACTCTTCTTCAAGAGTAAGGATGTCATGATTTTCAATGGTCTGATAGGTTTAGGAACAGTGGCCAGTCAGACAGCATACAATATTTTTGCATTTAACTGTCCATGTTCACCAAAGAAAAATTATCTGTACGGTCTGGCTGCCATTGGTGTACCAGCCCTGGCTTTCTTTGTCATTGGTTTGATGCTCAATCGAAATACCTGGGACGTTGTGTCAGAGTGTCGTACTAGAAAATGCCGGAAACTATCAGCGACTGCTGCTTTTGCTCTGTTGGGCTCTATTGTGGGCAGAGCAATCGTTGCCCCCATCACTTGGTCGGTTATTTCCCTCCTGAGAGGGGAGGCGTATGTCTGTGCTCTTAGCGAGTTTGTAGACCCCTCTTCTTTGGATAATTTCCCTCCTACTACAAAGATTCCAGAAATCATGGCCCGGTTTCCATGTAAGGATTTACCGGCTCCATTTATGAACTACTCAAGAGTGATTGAACGCCAGCTACAGTATGAATCCCAGCTGTTGGGCTGGTTGCTGGTGGGAATCATCTCCCTCACTGTCTTTCTGCTCCTCTGTCTAAAACACTGCTGCTCTACCCTTGGCTACCAGCAGGAGGCGTACTGGTCCCAGTATCGTTCCAACGAACAAGCTCTTTTCCAGCGTACAGCTGAAGTGCATGCTAAATACCATGCAGCTGAATGTGTCAAGAGCTTCTTTGGCTTTGCGGCCTTGGATAATGAGGAGAAGGAGCTTCTTGCAAGCTGTCAGGGAATCAAGAATGTCATTCCCAGACTGGAGTGGAACCGCGTCACTGGAGTTTACATGTACAGAGAGATCGATGACACTCCCCTGTACAGTCGCTTGAACAAATGGGACATGTATACAAAGGAGTTCAACGATTGAAAAAGATTTTGGGGGTAATCAGTTGGACGTTTAATTCTCTCTTTATTGTTCATTTTATACATTCAGAATTCTTTTCTCTTTTTTATGCATGGTAAACCATGCTTGGGTATTTTTTTGATATTTGTCATTGAAGGCGGTAATTCAGATTTTTCAGGGGTTTTTTTATTTGTTTTTTAATACATATTGTATGTTTTAGCTTTGTAGAGAGGTGATTGGCAGCTCAAAAAGTTATATTTTCATAATGCACAACAGACTTTAGCATATGTTTTAAGATACATGATGTACTCTCAGGTTGAGATGACCTCTTGTTATCCTTTGCTAAGCAATAAA

Function

symbol description
calhm2 Predicted to enable cation channel activity. Involved in positive regulation of apoptotic process. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19739 CALHM2; calcium homeostasis modulator protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12087234_12088283.mRNA True 1901 mRNA 0.41 2 12086904 12088924

Neighbor

gene id symbol gene type direction distance location
CI01000012_12079581_12084139 NA coding downstream 2765 12078936 ~ 12084260 (-)
CI01000012_12072222_12072632 ATOH7 coding downstream 14131 12071800 ~ 12072773 (-)
CI01000012_12061993_12069118 PKD2L1 coding downstream 17725 12061185 ~ 12069179 (-)
CI01000012_12047175_12052116 NA coding downstream 34363 12046728 ~ 12052541 (-)
CI01000012_12028095_12043862 INPP5F coding downstream 43042 12027911 ~ 12043862 (-)
CI01000012_12108309_12112818 NA coding upstream 19385 12108309 ~ 12112818 (-)
CI01000012_12117231_12121038 CALHM1 coding upstream 28120 12117044 ~ 12121173 (-)
CI01000012_12122967_12124124 CALHM3 coding upstream 33980 12122904 ~ 12125354 (-)
CI01000012_12132327_12133572 GSTO2 coding upstream 43264 12132188 ~ 12133572 (-)
CI01000012_12138610_12140673 GSTO1 coding upstream 49680 12138604 ~ 12141165 (-)
G77014 NA non-coding downstream 21929 12064562 ~ 12064975 (-)
G76966 NA non-coding downstream 140375 11945062 ~ 11946529 (-)
G76956 NA non-coding downstream 182169 11904512 ~ 11904735 (-)
G76914 NA non-coding downstream 186523 11897330 ~ 11900381 (-)
G76951 NA non-coding downstream 201227 11885447 ~ 11885677 (-)
G76994 NA non-coding upstream 563442 12652366 ~ 12665651 (-)
G77128 NA non-coding upstream 616415 12705339 ~ 12705552 (-)
G77134 NA non-coding upstream 630022 12718946 ~ 12719187 (-)
G77149 NA non-coding upstream 691836 12780760 ~ 12781057 (-)
G76982 NA non-coding upstream 809431 12898355 ~ 12899359 (-)
G75608 NA other downstream 1466033 10611915 ~ 10620871 (-)
G74982 NA other downstream 2510932 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 2684936 9398076 ~ 9402378 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 865522 12954446 ~ 12957833 (-)
G77287 NA other upstream 1530352 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005995 calhm2.2 coding NC_007124.7 CM002897.2 25418561 ~ 25426955 (+)