CI01000012_12061993_12069118 (PKD2L1)


Basic Information

Item Value
gene id CI01000012_12061993_12069118
gene name PKD2L1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12061185 ~ 12069179 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12061993_12069118.mRNA
ACAAGCTTCACTTGAGCATTTCATGATAAATCCATCTACCTTAACCTCTCAATTTACTACGATGCAACACCTCAATAACCGGGCAGAAAATCAGCTGGGCAGTACAGTAGCGTGCGAGCTGGATAACTTTGGGAAAGGAGCCTGGGTGAATCAGGCCTACAGTGGCTCTCCTGCACCCATCAGACGCCCCATCAGCACCATCTACGACCCTCAGCCCATGTTTCACAGTTCTTTGGAGAACATGAACCAACTGAATCTGTCTAATCCCTATTTGGCTGAGGATAAAGTGCGAACCCACCCCACTGAGGAGAAGAAGTCTGGATGCTGCTCCTTTTTCTTGAAAGCCATCAAAGGACTGTGGGGAACAGCTCTAAGAAAAGACACAAAGGAGAATCCTGAGCTCAATGTCAAAGCAAATCTCAAAGAACTGCTCATCTACATTGTTTTCCTAGTGGATTTGTGTCTGTTGACCTATGGCATGACCAGCAGCGCCACCTACTATTATACAAAAGCTATGACCGATCTATTTGTGAACTTACCGGGTGGCAGCGGAATCAGCTTTTCCTCCATTGGCAGCGTGAATGATGTCTGGACGTACATGGAGGGCCCATTACTTGACAGCCTGTACTGGACTAAGTGGTATAATGATGAGCCTCTTCAGAACGAAAATCAGTCCTTTATTTACTATGAGAATTTGTTGTTAGGAGTCCCCCGTATTCGACAGCTCAAAGTGAAGAGCAACTCCTGCAAGGTGCACAAAGACTTTCAGCAGGAGATCTCCGAGTGTTTTGATGTGTACAAAGACAAGAAGGAGGATGACAGCATGTTTGGACTGATCAACGGAACAGCCTGGCAGTACCACTCAGAAAAGGAGATCAAAGGGTCAAGTCACTGGGGGTTACTGACCACATACAGCGGAGCAGGATATTACCAAGACCTGGCAAAGACCAAAGAAGAGAGTACTGCTATTCTGAAGGACCTCAAAGACAACCTGTGGCTTGATCGTGGAACTCGAGTTCTTTTCATTGACTTCACGGCATACAATGCCAACATCAATCTCTTCTGTGTTGTAAGACTGGTGGTTGAATTTCCAGCTACCGGTGGAGCAATTCCATCCTACCAGATCCGCACTGTAAAGCTGATTCGTTACGTCACCACCTGGGATTTCTTCATCATCGGCTGCGAGATACTGTTCTGTGTCTTCATACTCTATTACATTGTGGAGGAGATTCTGGAATTCCGAATCCACAAACTGTCCCATTTCAACAGCATCTGGAACATTCTAGATTTAGTGGTGATACTGCTTGCTGTGGTGGCGATAATCTTCAGTGCCTTTCGGACCATCAAAGTGGATGAGTTACTTGGAAACCTTCTGAAACAACCTGACATCTATGCTGATTTTGAATTTCTTGCATTTTGGCAAACCCAGTACAACAATATGAATGCAGTAAATTTGTTTTTTGCTTGGATTAAGATCTTCAAGTACATCAGTTTCAATAAGACGATGACCCAGCTTACGTCAACCCTGGCTCGGTGTGCATTAGACATCTTTGGATTTGCCATTATGTTCTTCATTGTGTTCTTTGCATATGCTCAGTTGGGTTACCTGCTCTTTGGAATGGAAGTAGAAACATTCAGCACATTTAACAAGTGCATTTTCACACAGTTTCGAATCATCCTTGGAGACTTCAATTATGACGCCATTGACAGGGCAAACAGAGTACTTGGACCAATATACTTTTTCTCCTATGTGTTCTTTGTCTTCTTTGTGTTACTGAACATGTTTCTGGCCATCATCAATGACACATACTCTGAAGTGAAGTCAGAACTCGCTTCTCAGAAAGATGAGTTCCAGATTTCAGATCTCATCAAACAGAGTTATGCAAAGACCTTCATGAAACTGAAACTTAAAAAGGAAAAGATCTCTGATGTTCAGAAAGCCCTGGATGGAGGCTCGAGTGAGCTGGAGTTCAAAGATTTCAGGGATGCTTTGAAAGGAATGGGTCATGCTGACCATGAGATATCAGCAGCTTTCTCCAGATTTGACCAAGATGGGAACCAGACTTTGGACAAGCAGGAGCAGGAGAAAATGAAACAAGAGCTGGAGGAAAAAAGGGATGCACTCAATGCAGAGCTTCGTAATCTTGAAAACAGTGTTGAACCCACAGAGGACCACAGAAACAAAGTTCCTCTGGAGGACTTTCAGAGGCTTGTTCACAAAGTTGCTCAGCTTGAAAATGCTGTGACCACTATAATGTCCAAACTGGATGCTGTTATGGAGAAAATGAGACTTCAGACATTCAACACAGAAAACAGAGACATGGATAAGCAGACGGCTAGAGATGATGAATCAAGACCGGCTTCAGGAGGGAATATTCAGGTAAACCTGGAAAGAGTCTTAGCTCAGGGACCACCATCCTGGTCATTAGGTGGTCCGATGGGGAATATGAGGAATCGTTTGCACCCAGATGTAGGATGGCCAGTCGTCTCCGAGAACAGTAGTTCTGCACGCCACTGATTCATCAAAACCTGAGTTTAAAACTGACTAATATATATAAGCTTAACCTAAGCCCGGTCTGTGGATATAGACTCAGAATGTGACCGTAAAGAGGAAGGTATTACTGTAGAATAGATGTAGCACTCTGTTACCAATGGCACAGAAATCTGCTTGTGTCTCTTCTCCATACTGACTGTTTAACATGTGCAGTTACTGTGGCATTTATAGGAGGGAATAAGAGGTGATATGATTGTCAGTCTGATTATATTTGTCTTTAAGGCTTGATTAATGTTTCAGCACAGTGTAATTAATGTATTGTGGTGTGTTAAATACATTCCCTCTAGTTTCTGGGAATTTTTCAACTATATCAAGCCACAAACTATTCTTCTGACCTTCCTCCCTGTTGAAGAACTTTCATGATTACTATTAGTTCTTGTGAAACAACTTCTGTACAAATAAGATAAGTGGGAATTATTAATTAAACCCTGCATAATGTAATCTCAAAACGTTATTTCCAATTATATATGGAAACTTCACTGAGCTAAAATTAGTGAGAAGAGTCGATGCATTTGACAAATTATGAAAACAGTCAAAGTTCAATGTGTATTATTAGTTTATGGAACATTATTATATACTTTGAGGCATTTTCCTTAATCTCCTTCTTTACTTTGATATGAACTTCTTGTAAATGTTGTATTTTATAGTGAGAAGCATATCAGTGTATACTCAAACTACTTTAGTTTATACACTAATGTTGAAACAATATTGCTAGTATATACAAAAAGATATTTATATATTTATCTTTCTCTTCTTTTCTGATTCAAATAAA

Function

symbol description
pkd2l1 Predicted to enable calcium ion binding activity; cation channel activity; and muscle alpha-actinin binding activity. Acts upstream of or within mechanosensory behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; pharyngeal arch cartilage; pharynx; and spinal cord neural tube. Orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel).

NR:

description
novel protein similar to human polycystic kidney disease 2-like 1 (PKD2L1), partial

GO:

id name namespace
GO:0007638 mechanosensory behavior biological_process

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12061993_12069118.mRNA True 3326 mRNA 0.41 15 12061185 12069179

Neighbor

gene id symbol gene type direction distance location
CI01000012_12047175_12052116 NA coding downstream 8644 12046728 ~ 12052541 (-)
CI01000012_12028095_12043862 INPP5F coding downstream 17323 12027911 ~ 12043862 (-)
CI01000012_12007476_12016114 SEC23IP coding downstream 45071 12007417 ~ 12016114 (-)
CI01000012_11925364_11925971 PHS, PCBD1 coding downstream 135214 11924999 ~ 11925971 (-)
CI01000012_11905259_11905909 NA coding downstream 154941 11905156 ~ 11906244 (-)
CI01000012_12072222_12072632 ATOH7 coding upstream 2621 12071800 ~ 12072773 (-)
CI01000012_12079581_12084139 NA coding upstream 9770 12078936 ~ 12084260 (-)
CI01000012_12087234_12088283 CALHM2 coding upstream 17725 12086904 ~ 12088924 (-)
CI01000012_12108309_12112818 NA coding upstream 39130 12108309 ~ 12112818 (-)
CI01000012_12117231_12121038 CALHM1 coding upstream 47865 12117044 ~ 12121173 (-)
G76966 NA non-coding downstream 114656 11945062 ~ 11946529 (-)
G76956 NA non-coding downstream 156450 11904512 ~ 11904735 (-)
G76914 NA non-coding downstream 160804 11897330 ~ 11900381 (-)
G76951 NA non-coding downstream 175508 11885447 ~ 11885677 (-)
G76949 NA non-coding downstream 190172 11870492 ~ 11871013 (-)
G76994 NA non-coding upstream 583187 12652366 ~ 12665651 (-)
G77128 NA non-coding upstream 636160 12705339 ~ 12705552 (-)
G77134 NA non-coding upstream 649767 12718946 ~ 12719187 (-)
G77149 NA non-coding upstream 711581 12780760 ~ 12781057 (-)
G76982 NA non-coding upstream 829176 12898355 ~ 12899359 (-)
G75608 NA other downstream 1440314 10611915 ~ 10620871 (-)
G74982 NA other downstream 2485213 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 2659217 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 2977696 9081877 ~ 9083489 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 885267 12954446 ~ 12957833 (-)
G77287 NA other upstream 1550097 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005999 pkd2l1 coding NC_007124.7 CM002897.2 25455319 ~ 25471376 (+)