RNA id: TU87768


Basic Information

Item Value
RNA id TU87768
length 231
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G76951
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11885447 ~ 11885677 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAATGACATAAAAGAGAAACAAAAAGTAAGAGTATATTTCCAAATTGTGGAAAAAAGTGAATCAAAAATTAGACTAGGAAGTCAAAAATTCCCAAGTTTCAAAATCAATTGAGTAACTCATCAAAATAACAATGTGTTTCTATGCATATATATATATATATAGCCCTGTTGGGAGTCGAAACCTCTTGAATGACAACGACTGCTTCATTGGTTTTCATATTCTCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87766 lncRNA downstream 14434 11870492 ~ 11871013 (-) True G76949
TU87763 lncRNA downstream 25884 11859362 ~ 11859563 (-) True G76946
TU87755 lncRNA downstream 102218 11783026 ~ 11783229 (-) True G76938
TU87754 lncRNA downstream 118966 11766281 ~ 11766481 (-) True G76937
TU87753 lncRNA downstream 119687 11765472 ~ 11765760 (-) True G76936
TU87731 lncRNA upstream 11653 11897330 ~ 11900381 (-) True G76914
TU87773 lncRNA upstream 18835 11904512 ~ 11904735 (-) True G76956
TU87784 lncRNA upstream 59385 11945062 ~ 11946529 (-) True G76966
TU87837 lncRNA upstream 178885 12064562 ~ 12064975 (-) True G77014
TU87817 lncRNA upstream 766689 12652366 ~ 12665651 (-) True G76994
CI01000012_11799629_11846842.mRNA mRNA downstream 38605 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11585774_11608639.mRNA mRNA downstream 276472 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11292683_11315522.mRNA mRNA downstream 569429 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 795255 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 814118 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11905259_11905909.mRNA mRNA upstream 19479 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 39322 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 121740 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 142234 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
CI01000012_12047175_12052116.mRNA mRNA upstream 161051 12046728 ~ 12052541 (-) False CI01000012_12047175_12052116
TU86281 other downstream 1264576 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1264576 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2309475 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2309523 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2483479 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 163367 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 193259 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 193259 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1068769 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1733599 13619276 ~ 13633819 (-) True G77287

Expression Profile