RNA id: CI01000012_11585774_11608639.mRNA



Basic Information


Item Value
RNA id CI01000012_11585774_11608639.mRNA
length 1475
RNA type mRNA
GC content 0.48
exon number 6
gene id CI01000012_11585774_11608639
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11585628 ~ 11608975 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAGGCCAGCTCTGAGAAAGAAGTAAAGAATAAAAACAAGAAGGAAGAGAGTAACAGAGAGAGAAAGCAATAGTCTGTGAGCAATATGCTGACCCGAGAGACAGTGCTGGAGATAGTTGTCCCAGCGAGCGAGATAAAAGCTACATTACATGAAATTAATGGAGGCTGTGTGAGCTGTACATGAATCACTGTTTCAACACTATGAAACAAGTACAAAGGCATGAAAAAATCTAACCACAGCTTCAAAGGTCTGCCATTTAGTCAGTCAGAACAGGCCTGACAGAGGGAAGAGGGGGTTTAGATGAGCAGTTGAGCGAAAGAGTGTGAAACGAAGGAATGAGAAGGATAATACAAGACAAGGACTATGAGAAAGGCACAGTCTGGGAGAAAGAAAAAAGAATCGAATCGAATGAAGGGGAGCAGATGAGCATTTGCGCAGCTTGCGTCTCTTCTCTGAGTGTGTCTCTGTTCTATATCCGAGAGAGGCTGGGATGTCAGGGGCCAGTCTCCTCTCTTTATGAGGCCACGCTGCTACAGCCCTTCTGCACTCCGGCCCAACAGGACAGCTGCTCCACTCTCCCAAATACATCATCCTGTCCGCCAGCCGCTCCCAGGACACCCTACTGCCCCCCCTCCCGCTCGCCTCGCTCTCTTTCTCCTAGCACAAGGCCAGCAGTGTGTTTACCTAGTCATGTTGAATCCACACACTGGCCAGAGGAGGGTCAGCAGGAGGCCAGCACATCCCACCCCACAGTCCTGCTATTCATCCCTGTCACATACAGACAGGTCACACCCCTCACTCTGTCCTTCCTCTCTCTTTCCCAACTCGTTTATATGGAAATGTATGCAGAGCAAGTATGCAGTTTCAATTGTGACCGTCACGGTGGGCTGAACAGACTGACCTCTCAGGGTCAGGTGGGTGGGGATGGTGTTGACCATGACCTTGTGAGAAATGCCACTCTGACACAACAACACTGCTTGTTAGTGACATCTGCTGGGAAGAGCTGGCTCTCTTGTCTTTCAACCCTTACTGAAGCAAGTCCAGCCCCTGTCAACGTACCCTCAGCTCCCCCAACTTCTCACCCCTATCTGTCCCTTAACTGGGCAATGTGTAGACGTTCCTTCCCGCATGAACACAAGACCTGTCCTGATTCAGAAACAGTGCTAATGCACACTAAGTATGCTAGAAGGCTAAGTATGCAAGAGTGTATATGTGAGGTTGTTCTGTCGCCATTAGTAGGCTACAAGCTGCACCACACCTTGATTAATCTTGATCTTGAAAAGCACCAAAATATTGTGTCGTTTTTGAAGAACACTATTTGTCTATGAAGCAAACACACATGTGCATTTGCAAACAATTTCCACAAGCGCCAAGGTGTATTCAGCCATATAATTTTTCACTTCCTATTTCCTGAACCTTGTTGTAGACGCTATGTTAGCTTCTTCGCTACATCTCCCACTGGATGCTGAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87481 lncRNA downstream 324046 11261316 ~ 11261582 (-) True G76683
TU86717 lncRNA downstream 348929 11233826 ~ 11236699 (-) True G76012
TU86704 lncRNA downstream 379475 11205954 ~ 11206153 (-) True G76001
TU86698 lncRNA downstream 387895 11197307 ~ 11197733 (-) True G75995
TU86679 lncRNA downstream 410121 11175300 ~ 11175507 (-) True G75976
TU87711 lncRNA upstream 99891 11708866 ~ 11709233 (-) True G76896
TU87714 lncRNA upstream 106845 11715820 ~ 11716036 (-) True G76899
TU87715 lncRNA upstream 107070 11716045 ~ 11716250 (-) True G76900
TU87718 lncRNA upstream 108825 11717800 ~ 11718039 (-) True G76903
TU87736 lncRNA upstream 128584 11737559 ~ 11737836 (-) True G76919
CI01000012_11292683_11315522.mRNA mRNA downstream 269610 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 495436 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 514299 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 533216 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11000305_11008211.mRNA mRNA downstream 575791 10999678 ~ 11009837 (-) True CI01000012_11000305_11008211
CI01000012_11799629_11846842.mRNA mRNA upstream 190654 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 296181 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 316024 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 398442 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 418936 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
TU86281 other downstream 964757 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 964757 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2009656 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2009704 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2183660 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 440069 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 469961 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 469961 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1345471 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2010301 13619276 ~ 13633819 (-) True G77287

Expression Profile