RNA id: TU87715


Basic Information

Item Value
RNA id TU87715
length 206
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G76900
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11716045 ~ 11716250 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCACAAAATATCTGTTGATTTCTTGAACTCAATGGATAATCAGAGGTGTTTAAGTTAGAATCCACTCACTGCTCAAAACGCTGGAGTTTTTGTCCAGCGCTGAGTTCTGCCCCCTCGTAAATCCTCTCATTATAACAAACAAAGTGTAGACATTATGTAAATAAGAAATTCATTGTGCAGTCATCTTCACTGATTATAATGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87714 lncRNA downstream 9 11715820 ~ 11716036 (-) True G76899
TU87711 lncRNA downstream 6812 11708866 ~ 11709233 (-) True G76896
TU87481 lncRNA downstream 454463 11261316 ~ 11261582 (-) True G76683
TU86717 lncRNA downstream 479346 11233826 ~ 11236699 (-) True G76012
TU86704 lncRNA downstream 509892 11205954 ~ 11206153 (-) True G76001
TU87718 lncRNA upstream 1550 11717800 ~ 11718039 (-) True G76903
TU87736 lncRNA upstream 21309 11737559 ~ 11737836 (-) True G76919
TU87743 lncRNA upstream 34948 11751198 ~ 11751399 (-) True G76926
TU87744 lncRNA upstream 35242 11751492 ~ 11751829 (-) True G76927
TU87748 lncRNA upstream 43506 11759756 ~ 11759984 (-) True G76931
CI01000012_11585774_11608639.mRNA mRNA downstream 107070 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11292683_11315522.mRNA mRNA downstream 400027 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 625853 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 644716 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 663633 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11799629_11846842.mRNA mRNA upstream 83379 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 188906 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 208749 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 291167 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 311661 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
TU86281 other downstream 1095174 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1095174 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2140073 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2140121 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2314077 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 332794 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 362686 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 362686 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1238196 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1903026 13619276 ~ 13633819 (-) True G77287

Expression Profile