RNA id: TU87748


Basic Information

Item Value
RNA id TU87748
length 229
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G76931
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11759756 ~ 11759984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCCATCCAAAAAATAAAAATTCTGTTCCATTTACTTACCTTCATGTCATTCGAAACCTCCTTTCTTGTGAGGAAAACCAAAAAGGAAATTTTGAAGAATGTCGGTAACCAAACTGTTTCAGTTCCCGTTGACTTCCATTATATTTTTTGACCATACGATGCGACCCGAAACTGTTGTTTGAATTTTCATTTTTGGGTGGAAGTTGATATTTACGTGAAGTTGATATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87744 lncRNA downstream 7927 11751492 ~ 11751829 (-) True G76927
TU87743 lncRNA downstream 8357 11751198 ~ 11751399 (-) True G76926
TU87736 lncRNA downstream 21920 11737559 ~ 11737836 (-) True G76919
TU87718 lncRNA downstream 41717 11717800 ~ 11718039 (-) True G76903
TU87715 lncRNA downstream 43506 11716045 ~ 11716250 (-) True G76900
TU87749 lncRNA upstream 620 11760604 ~ 11760839 (-) True G76932
TU87750 lncRNA upstream 1193 11761177 ~ 11761387 (-) True G76933
TU87753 lncRNA upstream 5488 11765472 ~ 11765760 (-) True G76936
TU87754 lncRNA upstream 6297 11766281 ~ 11766481 (-) True G76937
TU87755 lncRNA upstream 23042 11783026 ~ 11783229 (-) True G76938
CI01000012_11585774_11608639.mRNA mRNA downstream 150781 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11292683_11315522.mRNA mRNA downstream 443738 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 669564 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 688427 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 707344 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11799629_11846842.mRNA mRNA upstream 39645 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 145172 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 165015 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 247433 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 267927 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
TU86281 other downstream 1138885 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1138885 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2183784 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2183832 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2357788 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 289060 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 318952 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 318952 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1194462 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1859292 13619276 ~ 13633819 (-) True G77287

Expression Profile