RNA id: TU87750


Basic Information

Item Value
RNA id TU87750
length 211
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G76933
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11761177 ~ 11761387 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGTCGCTGCATGTGGTGTTTATTTTCACTCTCGGGCCTGTGAGAGAGTCAGGAGACTGCTCTCACTCTGAGGGGGATGGTGTGGTCACAACCATGAGAGACTTTAGCCGAGAGGCTGTCTGTTTGATGGAACCACTGGCCCCTGTTTCCTTCCTTCCCTTTCAGGGCAGCTTGCACGGTCATATTGGCTCTTCTTCTCGATCTATCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87749 lncRNA downstream 338 11760604 ~ 11760839 (-) True G76932
TU87748 lncRNA downstream 1193 11759756 ~ 11759984 (-) True G76931
TU87744 lncRNA downstream 9348 11751492 ~ 11751829 (-) True G76927
TU87743 lncRNA downstream 9778 11751198 ~ 11751399 (-) True G76926
TU87736 lncRNA downstream 23341 11737559 ~ 11737836 (-) True G76919
TU87753 lncRNA upstream 4085 11765472 ~ 11765760 (-) True G76936
TU87754 lncRNA upstream 4894 11766281 ~ 11766481 (-) True G76937
TU87755 lncRNA upstream 21639 11783026 ~ 11783229 (-) True G76938
TU87763 lncRNA upstream 97975 11859362 ~ 11859563 (-) True G76946
TU87766 lncRNA upstream 109105 11870492 ~ 11871013 (-) True G76949
CI01000012_11585774_11608639.mRNA mRNA downstream 152202 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11292683_11315522.mRNA mRNA downstream 445159 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11088423_11089301.mRNA mRNA downstream 670985 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 689848 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 708765 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11799629_11846842.mRNA mRNA upstream 38242 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 143769 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 163612 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
CI01000012_12007476_12016114.mRNA mRNA upstream 246030 12007417 ~ 12016114 (-) True CI01000012_12007476_12016114
CI01000012_12028095_12043862.mRNA mRNA upstream 266524 12027911 ~ 12043862 (-) True CI01000012_12028095_12043862
TU86281 other downstream 1140306 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 1140306 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 2185205 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 2185253 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 2359209 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 287657 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 317549 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 317549 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1193059 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1857889 13619276 ~ 13633819 (-) True G77287

Expression Profile