RNA id: CI01000012_12132327_12133572.mRNA


Basic Information

Item Value
RNA id CI01000012_12132327_12133572.mRNA
length 646
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000012_12132327_12133572
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12132188 ~ 12133572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTGGAAACCTCAAGTGGTCAGGTGATATACGAGTCACCAATCACCTGCGAGTACCTGGATGAGGTCTACCCTGAGAAGAAGCTGCTCCCATCAGACCCATTTGAGAGGGCCCAACAGAAAATGCTGCTAGAGCTTTATTCAAAGGTGATTCCATACTTCTATAAAATCTCTATGGGCAAGAAAAGGGGAGAGGACGTCTCAGCCGCTGAAGTTGAGTTTACAGAAAAACTCTCCCAATTAAATGAGGCTCTAGCAAAAAAGAAGACCAAATATTTTGGAGGCGATTCAGTCACAATGATTGACTACTTGATCTGGCCATGGTTTGAGAGGGCAGAGATGATGAACGTGAAGCATTGTTTGGCCAACACTCCTGAGTTAAGGAAGTGGATTGAACGCATGTTCGAGGATCCTGTCGTGAAAGCCATCATGTTCAGCACAGAGGATCACAGGGTGTTCTTCGACAGCTACATGGATGGAAAGCCTAATTATGATCATGGTTTATAGAGTAAAATGGGATGATATATGTCCATCTGTGTGTGGAATTGTTATCATTACTCTATTTTTATCCTGAATTTACAGCAAATTATGCTTTTTACAATGGGTATATTAACATGTTTGTCATTTATACATAAATACAAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87837 lncRNA downstream 67213 12064562 ~ 12064975 (-) True G77014
TU87784 lncRNA downstream 185659 11945062 ~ 11946529 (-) True G76966
TU87773 lncRNA downstream 227453 11904512 ~ 11904735 (-) True G76956
TU87731 lncRNA downstream 231807 11897330 ~ 11900381 (-) True G76914
TU87768 lncRNA downstream 246511 11885447 ~ 11885677 (-) True G76951
TU87817 lncRNA upstream 518794 12652366 ~ 12665651 (-) True G76994
TU87974 lncRNA upstream 571767 12705339 ~ 12705552 (-) True G77128
TU87980 lncRNA upstream 585374 12718946 ~ 12719187 (-) True G77134
TU87995 lncRNA upstream 647188 12780760 ~ 12781057 (-) True G77149
TU87805 lncRNA upstream 764783 12898355 ~ 12899359 (-) True G76982
CI01000012_12122967_12124124.mRNA mRNA downstream 6834 12122904 ~ 12125354 (-) True CI01000012_12122967_12124124
CI01000012_12117231_12121038.mRNA mRNA downstream 11015 12117044 ~ 12121173 (-) True CI01000012_12117231_12121038
CI01000012_12108309_12112818.mRNA mRNA downstream 19370 12108309 ~ 12112818 (-) True CI01000012_12108309_12112818
CI01000012_12087234_12088283.mRNA mRNA downstream 43264 12086904 ~ 12088924 (-) True CI01000012_12087234_12088283
CI01000012_12079581_12084139.mRNA mRNA downstream 48049 12078949 ~ 12084139 (-) False CI01000012_12079581_12084139
CI01000012_12138610_12140673.mRNA mRNA upstream 5032 12138604 ~ 12141165 (-) True CI01000012_12138610_12140673
CI01000012_12142558_12152757.mRNA mRNA upstream 8931 12142503 ~ 12152757 (-) True CI01000012_12142558_12152757
CI01000012_12215687_12218599.mRNA mRNA upstream 81450 12215022 ~ 12218690 (-) True CI01000012_12215687_12218599
CI01000012_12255640_12268649.mRNA mRNA upstream 121906 12255478 ~ 12268796 (-) True CI01000012_12255640_12268649
CI01000012_12269600_12269899.mRNA mRNA upstream 135786 12269358 ~ 12269994 (-) True CI01000012_12269600_12269899
TU87842 other downstream 47928 12080546 ~ 12080752 (-) False G77017
TU87843 other downstream 47928 12080546 ~ 12083845 (-) True G77017
TU87807 other downstream 79981 12049044 ~ 12049222 (-) True G76984
TU86281 other downstream 1511317 10611915 ~ 10620871 (-) False G75608
TU87800 other upstream 820874 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 1485704 13619276 ~ 13633819 (-) True G77287

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011835 True 1011 mRNA 0.42 6 NC_007124.7 25397098 ~ 25402772 (+)