G75607


Basic Information

Item Value
gene id G75607
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10764163 ~ 10791209 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU86273
TTTGTAAATAATAAAAATGAACTCTTGAATATAAAACATACACATTATTTGAGCCACGTCTGCTGTACAAACAAGAAATGTTGCAGTGAATACTTTCAATTTTGTTTCAGTGGAACACATGAACTGTAAACAATCAGTATCCTTGAATAATACTGACAAAGTAAATAAGTCTGCCAAAACCAGGCATATAAAGTAAACTTCTCAATGAAACGAGGATTCATGAGCATTTATGATAAAGCAACAGGGTGGTAGAGGTCCAAATTTCTCTCGTCAGATTGGGCATCACTAAAATAAAACTTTGGAGGCATCCCTTCTTCCGCTCAGCAGAACCAAGAGACAGAGCACTGATCCATTAACTTGAATGGGGCCGCTTTGTAAATATAAGTAAACTTCTTTGCAGACTCATATTTACAATATATGCATGTACGTAAGTGATGTTTACTTGATACACTCTGTTTCAATATCGATATATCTCTAAGTCATTGTGATTTTCATAATTATATTCCATATACATATAGCTCTAGTTTTTATACAGGTTTTCTACCTTAGTTTTAGCCCCACAGTAGTACAGACTACAGTGAACACCAACATCTTCAATAAAATAGGGCCTTGAGTTTGCTGAGTACTACAGTACAGCACTTATTTATCCATCCAGGGTACAGAAAAAAAGGGGGTTAAAAAAAGAAGGGAACTAAACAATTTAAAAATTCTTATAGACATTCAGCCCCAAAATAAGGCCTGTGTGTATGGCTGAACCCGGCCAAATGCCCACACATGGAATGAATGGCTTCGTTTTATTTGATAATCTATTTATATCAAGTACAAGCAAACTGTACAAGTACATGCAACATACAAGCTGGCCTACAGTTTGTGGAACTAACACACACTTATTGTAGTCTCTTTTTTTCTCATCTGTCTTGTTTTACAAAATGTGCATGCAACTTGGAACAGTTCCAGATTCATGCTGTTCCCCGTGTTGGTGGCGAGCGGTCTTCTTCAGAGACCACGTCTCACTGTCACATTCAAAATGCTCAGGGGGGATCCATGAGATTCGTTTTATAATAAACTAAACCGAAAACCAGTGACAAACAGCTAAAAATAGGAAGCTTACGATTTTGGCCTCTTCTGATTTTTTTTTTTCCACTATTATTATCAATCCCCCAAAGCTTAAACTTTTCTCTTTTTTTGTTCAAAAATCAAGCAATTGTGCTTGCATTAAAATAATGTAAACTCTAGTCGGGTAGAAATTCTAATATCGGTATGTACAGGTCCTTTACCAAACGAAATAGAATTCAAAATGCTCTGAAATGTTAGTACGATATGTTTTGTGATAGCAAGAACTCTGCAAAGTCGAACGTGTTAGTGAGCTAATGCATGTAGTGACCGTTTCCGGAGTTTCCTGTTAGGGTTGAAGAAACCTAAATGATAGTGGCAACTTCTTACAGTCCCAGTGAATCAAATACAATTGGTTTTGTGTCTTCCATGAAGCTCATATGACACAAATGTCAGAAAACATGAAGCATGTTTTCACATTCTACAAAGTGTGCCTATTTACCAAATCAACAGTAACGTGAAAAGGCAAAGCAGTCTGTGGCGACTGCTGTAAACAGACTTAAAAGGTTCTCAGGCGTCCCTGCCTTATTAGACGCAAACGCACACTCACACACACACACACACACACACACACTGCAGTCACACAATCTGAGTCTGAGTTCGTGCCAGACCGGCACACGGCGGGGCCTCGGATGCAGCATCCGTGATGCAGAGAGGAAACTCTCTGAGAAGACTAAATCTTGACATTTAACCCTCGACCTCTGGTCTTTCAGCAGAGGGACTTCCTGTAAGTGCAATATAGAGGAGGGGCAGTGCTGTCCTCTCACTCTCGCCAACTCTGAAACACATACACATGTGAGAAGAAAAATACGCTGACTGACCAGAACGATCTAGGCTACCGGAACCACTGTGGGCTCTGCTTCCTGTCAAACGAAGCGGGGTCGCGTTTCGGGTGCCTCTCCCTTCCTTCTCTTTTTAATTGGGTCGAATCGTCATCTCAGCAACAAAACATGCAGTAAAAGAGCAGAGTGGATCAAAGGAAATCTCTACAACCCAAAGATCAAAAGTAAAACAGAGAAGTGATTGTCAGGCTTCAGCAAAGCTTTGATCATGATTCTGTCCGTCTGTCTCTTTATCTTCCGCTCCGGTTCTGATTGTTGCCTCGGGTCCTTGGTCCACTGGGTCGTGTGTTTTGTTTTGCATCTCGCTCCTGTCCATTCACTAGGACCTGATGATGCCCGGTGGCCCTGAAGAGTCCAGCGATGACTGGGAAGCGCGACGAGTGAGAGGAGCTAAGGTCGGGTCGACCAATGATGATGGGGGAAACAGTTTGTACCAACCAATCACTGTACTAGAAAGATCCAGCTCCTCTAAAAGAATCTGTGCGACTCCCATGAAACATTTGTGGTCCATGCGGCCATAATCTCCCCAGACTATTACCTGGAGAACTTTACCCTGCGGACTTTCCTCGAACAACAGCGATTGCTGATACAAAGGATCGAGCGTCTTTCGAGCAATCTTGGTTTTCTTTTTGGCTTTGCACGCACCGTTTTCCAGCAAATAGACCTTGACGTAGGGAGCTGGCAGCGATTTGGAACCTGGTTTAGGTGTAAGACCACGGGCCCTGATAACCTCCACCTCCAGCTGCCCTTTCTTATCCATCAGTCCAATCTGAACATCTCCCATAGCGGGCGTGGCAAGCGTTTGTCTACCCACCAACTGAGCAGGGCCAAGACCATCTAGGAAATCACTGAACTGGCTGTCAGCCCCTAACCTCATCCCTGAGAAGATCAGATTGCCCTCAGAGCTATAGCTGTTCATGCTGCCATCAGTGGACTCTCGGCTGGCTTGGCGGGCCATGGCGTTACGGGGATACTCCACTGCCATTCCCGTCTCCTGACTGCGCTGGATCTGACTGGATCCCTTTGCTTTCTTGTTGGCTGCTTCTGTCTGACTGAGCTGAGAGGTGCTTCTGCTGCGGCGTGAGGGAATGCCCACAATGGCGACTACACGGGCGCTAAGGCTGGATCTACGCTTTTTCCCGCCTCCTCCCAATGTTCCCAGAGCGGTGTCTGACTGGCTGCCATCCGTACGCTCCAGAGTGTAGATTTCCCCACTAACACTCGTACTCTTCAACATGCTGCGGCTGGATGGATGAATATGACGGCTAATGCGACCCCTGGGTCGTTCTGATTGAATGGACATGTAGCTGGTGCTACTGATCCGCGAGGCACTGCTGGCGCGAGAGATGGCTGACACGTCACTGACATCACTGTCTGAGGACTTATGGGACACATTGTCACAGCTCCGTCGCTGCTCCTTATAAAGCTCTCGTTTATTCTTGAGCGCCCTCTCCAGATCCTGGCTGGTACTGGAGGGAGCTGATGTTCGGAAGGTGCGTACTTTCATTTGCCGCGTTCGTTCCTCTGAGGCAAGAGCTTGCTCTACACTGCTGCTTTTAGCGGGAACTTGGGGAAGCTGTCTGACCTTTCGTGTCGAAGAAGAGTCCGCTGTTGATGAGGAGAATGTGGGGCGGGAGTGCGGCTGCACCCTGTCTCGTTCAGGTGAATTGGAATTAGAACCTGGTCTCAGACAGTTGGTACTAGCACTTCTAACCCTGTCAAGAGAGGGCTGTAGATCACTTTGGGTGTGCAGACACTCTGCGCTTCTACCCCGCATTGATCTGTGTATCAAGATGACCTCACTGTCGTCTACGTAATCTCTCTCTTGCACACGGGCACGATCATGGTAGCGAGTTGGGGAACGGGATCGCCGGGTGTGCTGAACCTCATCCAGACTCCTCTGTGCGGGGACGTTGGGAGGGCGGGACCGCCCCCTGCTTTCTTCGTCTCTGTGTGGAGACACGGACCGTGAGCGATACTGAGTTGGCCTCTGCTGGTCAGGAACCTCTAAAGTCGTTGCTCGGTCTCTGTCTCTGTCCCTTTCTCTTGATCGGTTTTCTGTAGGCTGCAGCTTTTTGGTGGGTGTTTCTGTGTGGCCGTGTCTGCGGGGCAGGTATGGCGACGGGTGCGGCAGTGGGATGGAAGAGACATCATGTGTCTGCAGCTTGTACCAGTGAGGCTTGTCATCTAGCAGGGCAGTCTCCAGCTCGATCAGGATCTCTCCCAGAAAGTCACTCTCCTCCTCTTGTATTCTGGGTTGGTCCCACACAGTAATCTCCAGCATGTGCTCCCTGAAATCCCGGCGATGGACATGAGAATACACAAACGTCTGGTTCCACTTGGGTTCCAGACTTTTCTTCACTGTTTTTGTCCTTCTCTTGCTCTTATCACTTCTATCAGGCAGGAAGTACATTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU86273 True 4372 lncRNA 0.47 16 10764163 10791209

Neighbor

gene id symbol gene type direction distance location
CI01000012_10705713_10710443 ASRGL1 coding downstream 53720 10705713 ~ 10710443 (-)
CI01000012_10696109_10703071 NA coding downstream 60977 10687849 ~ 10703186 (-)
CI01000012_10639383_10640319 NA coding downstream 123315 10639161 ~ 10640848 (-)
CI01000012_10626417_10638842 B3GAT2 coding downstream 125200 10625889 ~ 10638963 (-)
CI01000012_10395715_10408849 SLC2A15A coding downstream 355314 10395628 ~ 10408849 (-)
CI01000012_10799203_10801485 NA coding upstream 7569 10798778 ~ 10801537 (-)
CI01000012_10837437_10841732 NA coding upstream 46206 10837415 ~ 10841804 (-)
CI01000012_10934571_10937915 NA coding upstream 143290 10934499 ~ 10937915 (-)
CI01000012_10939589_10944243 EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 coding upstream 147746 10938955 ~ 10944243 (-)
CI01000012_10947838_10952009 SLC17A5 coding upstream 156629 10947838 ~ 10952009 (-)
G75796 NA non-coding downstream 83 10714098 ~ 10764080 (-)
G75751 NA non-coding downstream 212943 10550070 ~ 10551220 (-)
G75601 NA non-coding downstream 263087 10490985 ~ 10501076 (-)
CI01000012_10358145_10364166 FGF8, FGF8A, FGF8.L non-coding downstream 400975 10357341 ~ 10364166 (-)
G75814 NA non-coding upstream 5211 10796420 ~ 10796654 (-)
G75875 NA non-coding upstream 129012 10920221 ~ 10922346 (-)
G75892 NA non-coding upstream 131513 10922722 ~ 10927672 (-)
G75931 NA non-coding upstream 328311 11119520 ~ 11119825 (-)
G75932 NA non-coding upstream 328734 11119943 ~ 11121104 (-)
G75608 NA other downstream 143292 10611915 ~ 10620871 (-)
G74982 NA other downstream 1188191 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 1362195 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1680674 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1690706 9071371 ~ 9073457 (-)
CI01000012_12047175_12052116 NA other upstream 1257835 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1287727 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 2163237 12954446 ~ 12957833 (-)
G77287 NA other upstream 2828067 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001701 rims1,LOC102293251 coding CM030143.1 CM030143.1 12677472 ~ 12760544 (-)