G75796


Basic Information

Item Value
gene id G75796
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10714098 ~ 10764080 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU86482
CCTTATCATACCACATTTTCACCGACAGCTGTCCAGGCAGTAGCTGAGGGGCATCTCTAAGACCACTTGGGCTAGATGGGGACAGGACAGATATAGATGGTCTTTCCATCTTCTGTGATTCAAAAGAACTTGAACCTGTAGATTCTAATGGAGGATGTGATGTTTCTGGTATTCGTGGTATATCACCAATTGGCCTTGATACTACTAATTCAACTTTTGGTTCTGTTTGAGAATTCAAGATGATATTGTAAACTTCTTTCTTGGTTAATCCTGGTAATGATTTACCATTCCACTGAAGCACTTCATCACCGGCCCGTAGATGACCCACCACATCAGCTAGACTTCCTTTCTTGACTTTGGTGATGAAGGCCCCAAGTCTCCCAGTTTCTGTAATCTTCCCCCCAACCACCTGTACCTTTAGCCCCAGCAGAGCCCCAGCCTCTTTTGGCATGGCTGTTCGCTTGCTCAAAGTGATTCGGCCAATTAAATGATCACCTTCCTTGGAGGGCTGCCATGTAACCGGATGATGCCATGCGGTGGGGTCCAGTGGACAGCACTCCCAGTCCCCTCTCTCGCTGACGCTCTCGATCTCCACATCTTCACAGCTGGTGTACTCCGGTGTCGAACCAGCCTCTTCCTCCGAGCTGCTGACGGACATCTGTCTCTTGTTGCCGCCCCGTTTGCTCTTGTACGGACGGGGCGGGGGCGGTCGTAGAGACTCCGATTGGTCAGAGCTGAGCGAATCGTTGCGCAGCATGCTCTCTGCTTTTTGTCGTTTCGATTTGCGCAGTAGTGCAGCCGAGCCAGGGTCCAAGTGGCTCGGCTGCAACTTCCTGTCCCATTCCTGAGGCTCTCTAAGTTCAGGGGGGCCTGCGGGCATGGCAGGACCCACCCTGAACCCCGGAGCTGGCGGCTGTGGGGTGTGGTTCGTTTTAGCGGGAGGACCCTGCATAGCCGGTGCACCCTGCAAACCTGTACCCCCCGCGGTCCTCTCTGGCACGTAGGCCTGCTGCTGCCCCTCCAGCGAGGTCTGCCGCCCATCTGCCCATCTCCGTGCACCTCTGTTGTCCTGCACCATCTCTCCTGCTTCCCTCACCTTAGGCTGCATTCGTCCATCAGGCTCCGCTGGCCGGAGTTTGGCCGGATGATGTGGAGCATTTGGGTCAGTCCTGCACTGTTCCCTGGGTGATTTCTGCTCTCCCTCAGTCCTTCTAGTCTCAGGACTGTCGTGTTCCTGAGAGCGAGTCTTCATCAGTCTTCGACTTTCTCTCCGATTTTCTCCGGACTCTCGCTCTTCGGAACCCTGGGACTGGATTCTAGATAGCCCTCGCCGCCTCTCTCCTCTTGGCCCTGGCTTGCCATTCTGATCAGAGGCTGCTGGTGGCTTTTTTCTATCTTGTGGAGGCTCACTGCGTGAGCGCGATGACAGCGTGTCAGCTGACCCTGTAGAGGAGCCTTTTCTGGGGTCGGTTGGGGCAGGTGGCTGGGCGTCATGGGCAGTAGAAACGGAGGAGTTAAGAGGGTTCTGAGACCTAGAGCGCAACTTCTTCTCTCCAACGGGGTCTCCACACATGGCTGGTTCACTCACTGCTGACCCCAGCTCTCCAGGCTTGGGCCCATGGCTGGGAAACCATTCTCCTGATTTAGTGAGTATATCCTGTTGCCTTCGGCACTGGTTACATACCCACATTACCACTTTGTCCTCCTTGTTATTGGAACGCAGAGAGACCCTTCCCCCGCACCGGGCACAGAACTTAGTCTGGCAGTAGGAGCACAGGTTTCCGCAGCCATCAGCAAACTTGGTCTTGTGGCAGATGCCACAGGTGGGGGCGTCATCCTTGTGTTGGCCCTGCTGCCTCTGTTGGGGGGGCTCCGGCCCAATCCGCCTCACCTGCTCCTTGTAGTTGGCAACTTGCTGGTGCAAACTGATGTCGTTCTGCTGAGGTGGTTTCTTGTTCCCGACCAGGTTCACTGTTTTTGCTTGTATGGGCTTCTCCTCTTTGAGCATGGCCTCATCCTTCTCCTCTTCCTCCCTCTGCCGAACCATCACAGCCATGATAATTTTCCTCTCCTCCTCGGTGAGGTGACTGAGGTCCGGTAGCTCGGGCATGGAGATCTGCTTTGTGGGTGGGCGAGGGCCACCGCGGGGCCCCACCGAGGCGGACATATTTTACCCCTGTATGATCGGTGCACAATCCCAGCTATGTAAACCGCTATTCAGGACATAGTCCGATGGCTTATCTGCGGTTGTCGCGAGCGTGGCGAACCGTTCATCGTTGCGGCAGGCACCCACGGTTGTGCTTCTCTTCCTATACGGCTTTTT
>TU86481
CCTTATCATACCACATTTTCACCGACAGCTGTCCAGGCAGTAGCTGAGGGGCATCTCTAAGACCACTTGGGCTAGATGGGGACAGGACAGATATAGATGGTCTTTCCATCTTCTGTGATTCAAAAGAACTTGAACCTGTAGATTCTAATGGAGGATGTGATGTTTCTGGTATTCGTGGTATATCACCAATTGGCCTTGATACTACTAATTCAACTTTTGGTTCTGTTTGAGAATTCAAGATGATATTGTAAACTTCTTTCTTGGTTAATCCTGGTAATGATTTACCATTCCACTGAAGCACTTCATCACCGGCCCGTAGATGACCCACCACATCAGCTAGACTTCCTTTCTTGACTTTGGTGATGAAGGCCCCAAGTCTCCCAGTTTCTGTAATCTTCCCCCCAACCACCTTTAGCCCCAGCAGAGCCCCAGCCTCTTTTGGCATGGCTGTTCGCTTGCTCAAAGTGATTCGGCCAATTAAATGATCACCTTCCTTGGAGGGCTGCCATGTAACCGGATGATGCCATGCGGTGGGGTCCAGTGGACAGCACTCCCAGTCCCCTCTCTCGCTGACGCTCTCGATCTCCACATCTTCACAGCTGGTGTACTCCGGTGTCGAACCAGCCTCTTCCTCCGAGCTGCTGACGGACATCTGTCTCTTGTTGCCGCCCCGTTTGCTCTTGTACGGACGGGGCGGGGGCGGTCGTAGAGACTCCGATTGGTCAGAGCTGAGCGAATCGTTGCGCAGCATGCTCTCTGCTTTTTGTCGTTTCGATTTGCGCAGTAGTGCAGCCGAGCCAGGGTCCAAGTGGCTCGGCTGCAACTTCCTGTCCCATTCCTGAGGCTCTCTAAGTTCAGGGGGGCCTGCGGGCATGGCAGGACCCACCCTGAACCCCGGAGCTGGCGGCTGTGGGGTGTGGTTCGTTTTAGCGGGAGGACCCTGCATAGCCGGTGCACCCTGCAAACCTGTACCCCCCGCGGTCCTCTCTGGCACGTAGGCCTGCTGCTGCCCCTCCAGCGAGGTCTGCCGCCCATCTGCCCATCTCCGTGCACCTCTGTTGTCCTGCACCATCTCTCCTGCTTCCCTCACCTTAGGCTGCATTCGTCCATCAGGCTCCGCTGGCCGGAGTTTGGCCGGATGATGTGGAGCATTTGGGTCAGTCCTGCACTGTTCCCTGGGTGATTTCTGCTCTCCCTCAGTCCTTCTAGTCTCAGGACTGTCGTGTTCCTGAGAGCGAGTCTTCATCAGTCTTCGACTTTCTCTCCGATTTTCTCCGGACTCTCGCTCTTCGGAACCCTGGGACTGGATTCTAGATAGCCCTCGCCGCCTCTCTCCTCTTGGCCCTGGCTTGCCATTCTGATCAGAGGCTGCTGGTGGCTTTTTTCTATCTTGTGGAGGCTCACTGCGTGAGCGCGATGACAGCGTGTCAGCTGACCCTGTAGAGGAGCCTTTTCTGGGGTCGGTTGGGGCAGGTGGCTGGGCGTCATGGGCAGTAGAAACGGAGGAGTTAAGAGGGTTCTGAGACCTAGAGCGCAACTTCTTCTCTCCAACGGGGTCTCCACACATGGCTGGTTCACTCACTGCTGACCCCAGCTCTCCAGGCTTGGGCCCATGGCTGGGAAACCATTCTCCTGATTTAGTGAGTATATCCTGTTGCCTTCGGCACTGGTTACATACCCACATTACCACTTTGTCCTCCTTGTTATTGGAACGCAGAGAGACCCTTCCCCCGCACCGGGCACAGAACTTAGTCTGGCAGTAGGAGCACAGGTTTCCGCAGCCATCAGCAAACTTGGTCTTGTGGCAGATGCCACAGGTGGGGGCGTCATCCTTGTGTTGGCCCTGCTGCCTCTGTTGGGGGGGCTCCGGCCCAATCCGCCTCACCTGCTCCTTGTAGTTGGCAACTTGCTGGTGCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU86482 False 2323 lncRNA 0.55 13 10714098 10764080
TU86481 True 1920 lncRNA 0.55 11 10736721 10764080

Neighbor

gene id symbol gene type direction distance location
CI01000012_10705713_10710443 ASRGL1 coding downstream 3655 10705713 ~ 10710443 (-)
CI01000012_10696109_10703071 NA coding downstream 10912 10687849 ~ 10703186 (-)
CI01000012_10639383_10640319 NA coding downstream 73250 10639161 ~ 10640848 (-)
CI01000012_10626417_10638842 B3GAT2 coding downstream 75135 10625889 ~ 10638963 (-)
CI01000012_10395715_10408849 SLC2A15A coding downstream 305249 10395628 ~ 10408849 (-)
CI01000012_10799203_10801485 NA coding upstream 34698 10798778 ~ 10801537 (-)
CI01000012_10837437_10841732 NA coding upstream 73335 10837415 ~ 10841804 (-)
CI01000012_10934571_10937915 NA coding upstream 170419 10934499 ~ 10937915 (-)
CI01000012_10939589_10944243 EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 coding upstream 174875 10938955 ~ 10944243 (-)
CI01000012_10947838_10952009 SLC17A5 coding upstream 183758 10947838 ~ 10952009 (-)
G75751 NA non-coding downstream 162878 10550070 ~ 10551220 (-)
G75601 NA non-coding downstream 213022 10490985 ~ 10501076 (-)
CI01000012_10358145_10364166 FGF8, FGF8A, FGF8.L non-coding downstream 350910 10357341 ~ 10364166 (-)
G75676 NA non-coding downstream 358328 10355501 ~ 10355770 (-)
G75607 NA non-coding upstream 83 10764163 ~ 10791209 (-)
G75814 NA non-coding upstream 32340 10796420 ~ 10796654 (-)
G75875 NA non-coding upstream 156141 10920221 ~ 10922346 (-)
G75892 NA non-coding upstream 158642 10922722 ~ 10927672 (-)
G75931 NA non-coding upstream 355440 11119520 ~ 11119825 (-)
G75608 NA other downstream 93227 10611915 ~ 10620871 (-)
G74982 NA other downstream 1138126 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 1312130 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1630609 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1640641 9071371 ~ 9073457 (-)
CI01000012_12047175_12052116 NA other upstream 1284964 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1314856 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 2190366 12954446 ~ 12957833 (-)
G77287 NA other upstream 2855196 13619276 ~ 13633819 (-)

Expression


Co-expression Network