G75892


Basic Information

Item Value
gene id G75892
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10922722 ~ 10927672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU86590
GTCAAAACCAACATGCCGGGGCCATCTCTCCTGTCCCTGGGCACAGGTTGCTGATCCATATGAATAAAGCCAGGAAGCAGGTAGGCCAAAGTTTTGCCTGTTCCTGTCTGGGCTATTCCAATGAGGTCTATTCCTTTCAGGATAATTGGCCAGGCTTGTGACTGAATGGGAGTTGGCTTTTGAAATCCCACTCGGACAATGTTTTCCATTATTCCAGGATAGTGAGCAAAAGCCTCCTCAAAAGTGCACACTGGATTGGGAATGGTTCTTTTATCCTCGTCTTTCAGATCATCCACAAAGATGTTGTTGTTCTCTTTTCTCCAGATTTTGACTTCTTCTGCACTACGAGCAGCCACTGATTTTGCTTCAATATAGAAATCCTTCTTTAGAGTGGGAAGATCTTGCCATTTAATAGCTTCATATTTGTCACGGTTTTCTCTAAGTGCAGTCCAGTCAATAGGTAAAGGTGTTGGAGCAGCTGCGGCCACAGCTCGTACAGCAGAAGCTGGCCAGCATGAGTCACTCTGATATTCTGCATTGCTATTTCCATTGCGGTATCCAGGACCTCTGACAGAGTTCCCATGCACCAGATCTTCAATCATGTCTTTGGCTTTGAGCTGAGCATCACAGCTTCCAAAGATAAGCACCTCAGCATCATGCGCACCACGGTTTATCTTTATCGATGCTCCACTGCTCTCTTCGAGCTCCCGGATTTTCGCACCACCTCGACCTATTATCCTCCCCACCAAAGAGTTCTCCACATTTAGAGTTTCCGGTGATGAACCTGATCTGTCTCCACTACTACGACATCCTGTAGGTCCAGCCCTGGAACGACTGTAACTATTGTTTTTACCAACTTCACCGTCACAAATATTTGATTCAACGTCTCGGTCCCTCCGGTTTGTCCATTGCTCGCCCTCTCTTACATTACCAAACTTTGCGCCAACACTCGTGGCTTCTCGGCTTCGCGCGCCTCTCAAAGAGGGAGGCCTCCATGACTGTACCGGGGCGTTTTTAACGGGTAACGGCTTTGAAATCGCCACACCATCCGCATCGTATTCATCTTCCCAGTCCGACATTTAAAAACAAACATACAAAAACACAAGTTTAGATAATCGACGCTTCCCTCCCGATGGACCCAAAGTCACTGATCAGAAACATCGATCAATATCCGCTCACGTGATCCCAAATGGCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU86590 True 1197 lncRNA 0.47 8 10922722 10927672

Neighbor

gene id symbol gene type direction distance location
CI01000012_10837437_10841732 NA coding downstream 80918 10837415 ~ 10841804 (-)
CI01000012_10799203_10801485 NA coding downstream 121185 10798778 ~ 10801537 (-)
CI01000012_10705713_10710443 ASRGL1 coding downstream 212279 10705713 ~ 10710443 (-)
CI01000012_10696109_10703071 NA coding downstream 219536 10687849 ~ 10703186 (-)
CI01000012_10639383_10640319 NA coding downstream 281874 10639161 ~ 10640848 (-)
CI01000012_10934571_10937915 NA coding upstream 6827 10934499 ~ 10937915 (-)
CI01000012_10939589_10944243 EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 coding upstream 11283 10938955 ~ 10944243 (-)
CI01000012_10947838_10952009 SLC17A5 coding upstream 20166 10947838 ~ 10952009 (-)
CI01000012_10958668_10973745 RIN2 coding upstream 30662 10958334 ~ 10973745 (-)
CI01000012_10993043_10996095 NA coding upstream 64799 10992471 ~ 10996095 (-)
G75875 NA non-coding downstream 376 10920221 ~ 10922346 (-)
G75814 NA non-coding downstream 126068 10796420 ~ 10796654 (-)
G75607 NA non-coding downstream 131513 10764163 ~ 10791209 (-)
G75796 NA non-coding downstream 158642 10714098 ~ 10764080 (-)
G75931 NA non-coding upstream 191848 11119520 ~ 11119825 (-)
G75932 NA non-coding upstream 192271 11119943 ~ 11121104 (-)
G75933 NA non-coding upstream 193632 11121304 ~ 11121901 (-)
G75944 NA non-coding upstream 207316 11134988 ~ 11135220 (-)
G75955 NA non-coding upstream 222677 11150349 ~ 11150578 (-)
G75608 NA other downstream 301851 10611915 ~ 10620871 (-)
G74982 NA other downstream 1346750 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 1520754 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1839233 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1849265 9071371 ~ 9073457 (-)
CI01000012_12047175_12052116 NA other upstream 1121372 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1151264 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 2026774 12954446 ~ 12957833 (-)
G77287 NA other upstream 2691604 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006651 ddx43 coding NC_007124.7 CM002897.2 27332656 ~ 27354033 (-)