CI01000012_10696109_10703071


Basic Information

Item Value
gene id CI01000012_10696109_10703071
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 10687849 ~ 10703186 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_10696109_10703071.mRNA
AGTGCAAGTCTGCATAGCTGTGTCCACTGTCCAGGAAATGGCTCCGTTATGACAAAAAGTTATGAAAAGTAAGCTACAATATATGCACTTGATCGATTTAATATATTTGAGCAATATGATATGGACAGGAGATAAATTTCAACACTCTTCTTCCGTCCGTAAGCACCATGCCGCAGTAGTGATAGAAACCCGCTTAGAGAGATCAGTGAGCGCGAGAAAACATCGACTCTCACCTTCAACAACTGCTGCTCTGTTCAGCCTCATGCGCTGCGTTGGCATTGTAGTTGGGTGCGTTGGCATGAGCCATAGGAGGACAATGTGTCGAGACCCATTCATTAAACCCTTCATTATTGCATTTAACATGTTAAATGACTTGTTCTCTTGCTGTGAGTTTCGTGCCTGGAATCAGCAAGCTGTGTTTAACTGCCCGTTGAGTGCAAAGGAGTGTGACCTTCACCAAGCCCTCATGGTGTCACAAGGTGGGCCAAACCTTGCCAGAATGACTGTCTCTCCATGGACACAGAGTTTTTGTATCAGCAATGGTACAAATTTCAGTGTATTAGGGTTTCAGTCAGTGTCAGGTTTAGGTATCGTCTGCGTGGGCAAAAAACAGCTGGCAGTACGGGCTACTGTAAACATCCTTGACTGGAAGCTGGTGCTTAAGATGGAGCTTTCAGTCGGATGTTTGCAGCAGCCAACTGCTGTTACTCTCACCCGGAAACCTGCAGCAGGAGAACATGGACACACCCACTGGAGCAAACCATCTGATTTTAATGTTCAGATTGTTGAGGTCCAATTACTTCTAGTCCCACTCTCTGAAGAGCCACTTAATGTCCATTCACTAGGCCAACAACTTAGTTTCAAAGGCCTGTATCACAGATACAGAGAGCAGAGGACTCTCGCTTTCCCACCTCCTGCAAGAAGGCTCCCACAGGGCGAGCGATGAAAAGCACAGAAATGTGATCCTGAAGAACAGCTTTGGGTCAGCAAAGTGAAAACTTTCAAGCTTACAAAGTCCATTCACTGAACCAATTGATACATTAACACTGTCTAATATTTAGGATTTTGCTCTTTGTTTGACCACTTCTTATATTCAGACTACAAGCTTTGCAAAATATCGGACAACACTGCTAAATGCTTATCTTAAACATTAATATCACTACAGATGCATTATTCAAGTTGAGACCTATATTTTTAGTATTGTGAACCATGTTTGGAGTGTAGTAGTTTTGACTAGTCTTTATGATGTATTTCAATGGAGTAAATTTACTCTTCTGTTAACACTGTAAATGTAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_10696109_10703071.mRNA False 1299 mRNA 0.42 7 10695756 10703186

Neighbor

gene id symbol gene type direction distance location
CI01000012_10639383_10640319 NA coding downstream 54908 10639161 ~ 10640848 (-)
CI01000012_10626417_10638842 B3GAT2 coding downstream 56793 10625889 ~ 10638963 (-)
CI01000012_10395715_10408849 SLC2A15A coding downstream 286907 10395628 ~ 10408849 (-)
CI01000012_10358145_10364166 FGF8, FGF8A, FGF8.L coding downstream 331590 10357341 ~ 10364166 (-)
CI01000012_10322141_10348992 FBXW4 coding downstream 346764 10322141 ~ 10348992 (-)
CI01000012_10705713_10710443 ASRGL1 coding upstream 2527 10705713 ~ 10710443 (-)
CI01000012_10799203_10801485 NA coding upstream 95592 10798778 ~ 10801537 (-)
CI01000012_10837437_10841732 NA coding upstream 134229 10837415 ~ 10841804 (-)
CI01000012_10934571_10937915 NA coding upstream 231313 10934499 ~ 10937915 (-)
CI01000012_10939589_10944243 EEF1A1B, EEF1A1, EEF1A1A, EEF1A1.L, EF1A1 coding upstream 235769 10938955 ~ 10944243 (-)
G75751 NA non-coding downstream 144536 10550070 ~ 10551220 (-)
G75601 NA non-coding downstream 194680 10490985 ~ 10501076 (-)
G75676 NA non-coding downstream 339986 10355501 ~ 10355770 (-)
G75675 NA non-coding downstream 340285 10355244 ~ 10355471 (-)
G75796 NA non-coding upstream 10912 10714098 ~ 10764080 (-)
G75607 NA non-coding upstream 60977 10764163 ~ 10791209 (-)
G75814 NA non-coding upstream 93234 10796420 ~ 10796654 (-)
G75875 NA non-coding upstream 217035 10920221 ~ 10922346 (-)
G75892 NA non-coding upstream 219536 10922722 ~ 10927672 (-)
G75608 NA other downstream 74885 10611915 ~ 10620871 (-)
G74982 NA other downstream 1119784 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 1293788 9398076 ~ 9402378 (-)
CI01000012_09082056_09083285 NA other downstream 1612267 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 1622299 9071371 ~ 9073457 (-)
CI01000012_12047175_12052116 NA other upstream 1345858 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 1375750 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 2251260 12954446 ~ 12957833 (-)
G77287 NA other upstream 2916090 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006022 dre-mir-30e-2 non-coding NC_007124.7 CM002897.2 27795130 ~ 27795209 (+)