RNA id: TU85809


Basic Information

Item Value
RNA id TU85809
length 321
lncRNA type intronic
GC content 0.34
exon number 1
gene id G75230
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9987365 ~ 9987685 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGATCCCCAAATCCAGGTGTGAAAAACTTGTTGCATCTTTCCCAAAAAAGACTCATGGCTGTATTAGATCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGAAAAAAAATGAACTTAAATGATTTTAGCAAATGGCTGCAATATAACAAAGAGTAAAAAATTTAAGGGGGTCTGAATACTTTCCGTACCCACTGTATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85789 lncRNA downstream 170329 9815978 ~ 9817036 (-) True G75212
TU85765 lncRNA downstream 217856 9766445 ~ 9769509 (-) True G75189
TU85557 lncRNA downstream 345421 9641710 ~ 9641944 (-) True G75004
TU85554 lncRNA downstream 347716 9639446 ~ 9639649 (-) True G75001
TU85550 lncRNA downstream 350221 9636905 ~ 9637144 (-) True G74997
TU86324 lncRNA upstream 98266 10085951 ~ 10086261 (-) True G75645
TU86325 lncRNA upstream 98590 10086275 ~ 10086512 (-) True G75646
TU86326 lncRNA upstream 101371 10089056 ~ 10089273 (-) True G75647
TU86327 lncRNA upstream 102320 10090005 ~ 10090218 (-) True G75648
TU86309 lncRNA upstream 191444 10179129 ~ 10179830 (-) True G75630
CI01000012_09976030_09976302.mRNA mRNA downstream 10998 9975571 ~ 9976367 (-) True CI01000012_09976030_09976302
CI01000012_09974294_09974754.mRNA mRNA downstream 12309 9973339 ~ 9975056 (-) True CI01000012_09974294_09974754
CI01000012_09926268_09941904.mRNA mRNA downstream 44971 9926073 ~ 9942394 (-) True CI01000012_09926268_09941904
CI01000012_09894361_09922003.mRNA mRNA downstream 64922 9893656 ~ 9922443 (-) True CI01000012_09894361_09922003
CI01000012_09862141_09892366.mRNA mRNA downstream 94999 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
CI01000012_10114837_10117992.mRNA mRNA upstream 126711 10114396 ~ 10119291 (-) True CI01000012_10114837_10117992
CI01000012_10119912_10169990.mRNA mRNA upstream 132227 10119912 ~ 10169990 (-) True CI01000012_10119912_10169990
CI01000012_10189922_10194006.mRNA mRNA upstream 202191 10189876 ~ 10194006 (-) True CI01000012_10189922_10194006
CI01000012_10201667_10213604.mRNA mRNA upstream 213712 10201397 ~ 10213604 (-) True CI01000012_10201667_10213604
CI01000012_10217709_10222035.mRNA mRNA upstream 229523 10217208 ~ 10222035 (-) True CI01000012_10217709_10222035
TU85530 other downstream 411393 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 411441 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 585397 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 903876 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 913908 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 624230 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 624230 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2061359 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2091251 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2091251 12080546 ~ 12083845 (-) True G77017

Expression Profile