RNA id: TU85765


Basic Information

Item Value
RNA id TU85765
length 508
lncRNA type antisense_over
GC content 0.46
exon number 6
gene id G75189
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9766445 ~ 9769509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACTGTAAATATCTCAGATCCAGGCGAAGAGACCTCATAGACATAACCAAAGTAAGGAGTTCCAACAAACACAGGAGGAGTGTCTTGAATGTCAATCACATTTATCGTCAAAGTGGCTGATGATGACATCACTTGTTGCTTGCCCTTGTAAGTGCCACCTCCATCCTTTGCCACCACAGTGATGAAATGTGTGCGGGATTTCTCATAATCGAGGGCTTCGCCTGGTTTTATCCTCAGCACGCCACTATGGTGGTCGATGGCAAACTTTGTGCTCGGTTCACTGCTCTGGAGGAAGTAAGTGACTGATCCCCCTGATCCGGCATCTCTGTCCACTGCCTGCACTTTGTAGATGCTGCTCCCAGATGTAGTGTTCTCTGGCACATCTACGATGGAAGGCATGTTCTGAAACTGTGGTCTCTCATCATTGGCATCCATGACAATAACCGAAACCTTTTCAACTACTTTATTAAGGCCATCTGAGATACTGACAAAGACTTCAATTTCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85557 lncRNA downstream 124501 9641710 ~ 9641944 (-) True G75004
TU85554 lncRNA downstream 126796 9639446 ~ 9639649 (-) True G75001
TU85550 lncRNA downstream 129301 9636905 ~ 9637144 (-) True G74997
TU85549 lncRNA downstream 130047 9636147 ~ 9636398 (-) True G74996
TU85547 lncRNA downstream 134995 9631239 ~ 9631450 (-) True G74994
TU85789 lncRNA upstream 46469 9815978 ~ 9817036 (-) True G75212
TU85809 lncRNA upstream 217856 9987365 ~ 9987685 (-) True G75230
TU86324 lncRNA upstream 316442 10085951 ~ 10086261 (-) True G75645
TU86325 lncRNA upstream 316766 10086275 ~ 10086512 (-) True G75646
TU86326 lncRNA upstream 319547 10089056 ~ 10089273 (-) True G75647
CI01000012_09754856_09756772.mRNA mRNA downstream 9489 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09589749_09615649.mRNA mRNA downstream 150796 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09513757_09517777.mRNA mRNA downstream 248668 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 292970 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 305157 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09782840_09786910.mRNA mRNA upstream 13101 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 18186 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 60656 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
CI01000012_09862141_09892366.mRNA mRNA upstream 92366 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
CI01000012_09894361_09922003.mRNA mRNA upstream 124147 9893656 ~ 9922443 (-) True CI01000012_09894361_09922003
TU85530 other downstream 190473 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 190521 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 364477 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 682956 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 692988 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 842406 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 842406 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2279535 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2309427 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2309427 12080546 ~ 12083845 (-) True G77017

Expression Profile