RNA id: TU85547


Basic Information

Item Value
RNA id TU85547
length 212
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G74994
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9631239 ~ 9631450 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGAATGCATCTGGACGTTTCTGAATGGTTAGTGGATAAATTGATGTAGTTGCTGTGGAGTTGATTCAACTCATCGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAATGTTGAATTGACCCTCGTTTGTGAAGCAGTCCAGCGTAAAATGACGGCATGGCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85534 lncRNA downstream 46069 9584874 ~ 9585170 (-) True G74986
TU85526 lncRNA downstream 55090 9575648 ~ 9576149 (-) False G74982
TU85527 lncRNA downstream 55267 9575695 ~ 9575972 (-) True G74982
TU85524 lncRNA downstream 58804 9572222 ~ 9572435 (-) True G74981
TU85519 lncRNA downstream 75708 9555299 ~ 9555531 (-) True G74976
TU85549 lncRNA upstream 4697 9636147 ~ 9636398 (-) True G74996
TU85550 lncRNA upstream 5455 9636905 ~ 9637144 (-) True G74997
TU85554 lncRNA upstream 7996 9639446 ~ 9639649 (-) True G75001
TU85557 lncRNA upstream 10260 9641710 ~ 9641944 (-) True G75004
TU85765 lncRNA upstream 134995 9766445 ~ 9769509 (-) True G75189
CI01000012_09589749_09615649.mRNA mRNA downstream 15590 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09513757_09517777.mRNA mRNA downstream 113462 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 157764 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 169951 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 228861 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09754856_09756772.mRNA mRNA upstream 123145 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 151160 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 156245 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 198715 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
CI01000012_09862141_09892366.mRNA mRNA upstream 230425 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
TU85530 other downstream 55267 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 55315 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 229271 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 547750 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 557782 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 980465 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 980465 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2417594 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2447486 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2447486 12080546 ~ 12083845 (-) True G77017

Expression Profile