RNA id: TU85519


Basic Information

Item Value
RNA id TU85519
length 233
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G74976
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9555299 ~ 9555531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGGAGGTGAGAATAAGACCAAAATATTTTCTTACAATATCAGTCTTTTTTCTACCACAGTAACGATAGACATCACAATATAGAAATTTTGTCTGAACTGTGGCTTGTTTCTAAAACGAGAAGTCACTAAATGAAATCAAAGCCATACCATATATTTGTCAAAGTTGTTACTTAAATAGCAGCTGATTAAATTTGAAAGATTTTAAGCTCACATCAGACTTTGATAACGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85516 lncRNA downstream 11103 9543959 ~ 9544196 (-) True G74973
TU85514 lncRNA downstream 14650 9540436 ~ 9540649 (-) True G74971
TU85512 lncRNA downstream 17693 9537400 ~ 9537606 (-) True G74969
TU85511 lncRNA downstream 17901 9537086 ~ 9537398 (-) True G74968
TU85497 lncRNA downstream 61381 9493052 ~ 9493918 (-) True G74955
TU85524 lncRNA upstream 16691 9572222 ~ 9572435 (-) True G74981
TU85526 lncRNA upstream 20117 9575648 ~ 9576149 (-) False G74982
TU85527 lncRNA upstream 20164 9575695 ~ 9575972 (-) True G74982
TU85534 lncRNA upstream 29343 9584874 ~ 9585170 (-) True G74986
TU85547 lncRNA upstream 75708 9631239 ~ 9631450 (-) True G74994
CI01000012_09513757_09517777.mRNA mRNA downstream 37522 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 81824 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 94011 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 152921 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 160249 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09589749_09615649.mRNA mRNA upstream 32913 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 199064 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 227079 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 232164 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 274634 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
TU85327 other downstream 153331 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 471810 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 481842 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 484632 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1187656 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 20117 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 20117 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1056384 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1056384 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2493513 12049044 ~ 12049222 (-) True G76984

Expression Profile