RNA id: CI01000012_09789066_09792437.mRNA


Basic Information

Item Value
RNA id CI01000012_09789066_09792437.mRNA
length 3303
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000012_09789066_09792437
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9787695 ~ 9792437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCTCTTACTGTCTTTTTGGGTCTCCTACTGGCATCTGGTGGCTTTCCACTTGTTCGGAGCACCTGTCCTTCCCAGTGCAGCTGCTTTTATCATAACCTGAGTGATGGTTCCAGAGCCAGGAGCGTGATTTGCAACGATCCAGAGATTTCCCTGGTGCCCGCCACGTTCCCAGAGGACACCTCGAAACTTCGGATTGAAAAGACTGCCATAAAGAGGATCCCGAGCGAGGCTTTTAGCTACCTCTCTAATTTAGAATTCCTTTGGATGTCTTTTAACGTTTTATCCTCTCTCAACTCGGACAGTTTCCGTGGCTTGTACAGTTTAGAGGAACTAAGGTTAGACGGAAATTCGCTCACTTCTTTTCCGTGGGAATCCCTCATGGACATGCCCAGTCTGAGGCTACTCGATATACACAACAACCAGCTGTCCTCAGTACCCTCTGAGGCTGCTCTCTATATGAAAAATTTAACCTACCTGGATCTATCCAGTAATAATCTGCTGACAGTGCCACCTGAGGTGCTCAACACTTGGTTGACGGTCAAACCCGTCCAGGGAGTAGAAAGTTCAAAAATGATTCTTGGTCTCCATGACAACCCATGGTTGTGTGATTGTCGTTTATACGACCTGGTCCAGTTCCAGAAGTCTCCCACTCAGTCAGTGGCCTTCATTGACACAAGGCTCAGGTGCGCTGATCCAGAGAGCCTCTCTGGAGTTCTATTTAGTGATGCCGAGCTCAGACGGTGCCAGGGCCCTCGTGTCCACACAGCTGTAGCCCGTGTGAGGAGCGCAGTGGGCAACAATGTCTTGTTGAGATGCGGAACCATTGGTGTTCCCATCCCTGAGCTGGCCTGGAGAAGGGCAGATAGAAAACCACTGAATGGGACAGTTCAACTGGAGAATTCAAAGGAGGGAATAGTGTGGTCTATTTTAAGCGTGCCTGCCGTGTCCTATCGTGACACGGGAAAGTACATCTGCAAAGCCACAAATTATGCAGGGAGTGCAGAGGCCGTCATTTCTTTGATCATAAGCGATGGACCCAAAGCAGAGAATCCAACTGTGGATCCAAAAACCAAAGTGAAGTCTAAGAAGCCAAACCCTATAGTCAAGGCAGCCTATCAAGAAAAACACATTGTCACATATGTTTCCCCAACACCCAACAATGTGCTACCACTTGGTGCCACAGTTAGCTACACAGGCCCGTATCCAGGTATGCAGAGCGACAATGCTGCTAACAGTCGGACAAATACCCAAACAGCCAGTCCCGACGGGTTCCTGGAGACCAATCTGAGCAACCTGGCTGCAAACACGTCCTCACTTCAGCAAGACCCTGACAGGGTTGTGCGCTCTGTGAAAGTGATTGGCGATACGGATTACACTGTGTGTCTGAACTGGAGGGCACCGACTGCAAAGAACACAACCGCTTTTAGCGTCCTCTACGCTGTGTTTGGGGAGAGGGATATGCGCAGAATTAACGTCAGTCCAGGTAACAACCGGATCCTCATCGAGGGACTGGTTCCAAAAACCAAATACATCGCCTGTGTGTGCGTCAAGGGGCTGATCCCCAAAAAGGAGCAGTGTGTAATCTTCTCAACAGATGCAGCTGCTAGCGCTAATGGAACCCAAAAGCTCATTAATGTAGTAGTAATCACGGTTGCCTGTGTGATAGCTGTGCCTCTGACTGTGATAGTGTGCTGCGGGGCACTTAAGAGGAAAATCAAGAAGTTTCTGGGCAAAAAGTCCAAAGATATTCAAGACTCATATGTGACGTTTGAAACTCTGTCTCCCAGTACCAAGGCTAAAGGCTTGGAGGGGGAATATCTCACCAGACTGAACGCAGAGGAGTCCAACAGACTGCTGTCGGCCAGGTCCAGCCTAGACTCTGAGTCCACCGCCAAAATTGAGGGACAGCCGAATGAATACTTCTGCTGACAATATCCCTCAGCCACAATTCCGCCACGCAGCCTCCAGAGTATCCAGGCCCAGCCGCAGTACCTGAGTGCACACAATCTGTACCAGCAGTACATGACTGGCCGTCCGTGAAGAAGATTCAGGATACTTTGCATAAGTAACAAAGTGCACAAGTGAGGATCTTTATGTTGTCTTGGTAATGTTGCTCTTTGTTACTGTGCTTTTGGATTGGTTAGAAACTAACCATTTGGCTGGTGGTGGGGTTGTGGCTGAGCAATCCCAGGAACATGTTTTCATGGACTTTTAACCCTTTAGATAGTGCTGGAATGAACTGATTCAAAGGGAAATGTTCATATGAATTCTTGTATATTTATGTATATGGGGAAAAAATCTATTTATATGTGATATATATAGTAATAAGGAATTGGGGATTCATTTCCATTTTTGCAGTGATGCCATAGAAGAATAATTTTTGGTTCTCTTAAGAATATTACAGTGAACAGTTCTTTTTTTAAAAACTTTTTTTTTCTTGTGTACAACATTTTAAAAATATAAAGAACCTTTTCCACTATAAAGATCCTTTTGTGGAATAGAAAGGTTCCATAGATGTTAAAGGTTCTTCATGGAACCATTTATTCAAATAAAGAACCTTTATTTATTATTTAGGCCCCGTTTACACTAGTGCGTTTTTGTTTTAAAACGGCGTTTTAAAATGAAAACGATCCTCATCTACACTGGCGTTTCCACAGCGTTTCAGAAACGATCTCCGTCTACACTACACGGCCGAAAATTCATGTCACATGACCGTTCAAGCACACTGGGCATGCGCGTACAAGTGTAAACAATTGCTTCTTGCGCACGTAGGATGCTGAAGTATTAAAAAAATGCACAGTTTATCTGCACAATGGCTGCTAAAAATTACAACAAAGCCAGCAAAGATTGCATTCCAGTCGCCATGTTATTGTTTACACGGTCGTCAAGGATACGCAAAGCGAATGTGGGCAGCCACGCCATCGTTTTCAAAAGTCTCCGTTTTGGTCTGTTTATACTGAAACGCAACCCCGGCGTTTTCAAACTAAAACGGGCTCTGGGTACGAAAACACCGGCGTAGTGTAAACGACAGGTGTAACCGCAGCAAAAGTTACGCGTTTTAAAATGAAAACGCACTAGTGTAAACGGGGCCTTAGAGTGTAGTTACTTTTCTAACAGAATGAAGAGTCTAGTGTAACACATGCAAAATCATAAAAATCATTTGGGATTTTCATATGCTCCAACATAGTCATCATTGTGTATGTGATATTACTTCTGTTTAAATGTAAAACTTGTGCTACCTGAACCATTCAGAACTTTTTTTTTTGTCCCAGGTTTCACCCATTTATGCTTCAAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85765 lncRNA downstream 18186 9766445 ~ 9769509 (-) True G75189
TU85557 lncRNA downstream 145751 9641710 ~ 9641944 (-) True G75004
TU85554 lncRNA downstream 148046 9639446 ~ 9639649 (-) True G75001
TU85550 lncRNA downstream 150551 9636905 ~ 9637144 (-) True G74997
TU85549 lncRNA downstream 151297 9636147 ~ 9636398 (-) True G74996
TU85789 lncRNA upstream 23541 9815978 ~ 9817036 (-) True G75212
TU85809 lncRNA upstream 194928 9987365 ~ 9987685 (-) True G75230
TU86324 lncRNA upstream 293514 10085951 ~ 10086261 (-) True G75645
TU86325 lncRNA upstream 293838 10086275 ~ 10086512 (-) True G75646
TU86326 lncRNA upstream 296619 10089056 ~ 10089273 (-) True G75647
CI01000012_09782840_09786910.mRNA mRNA downstream 785 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09754856_09756772.mRNA mRNA downstream 30739 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09589749_09615649.mRNA mRNA downstream 172046 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09513757_09517777.mRNA mRNA downstream 269918 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 314220 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09830411_09851586.mRNA mRNA upstream 37728 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
CI01000012_09862141_09892366.mRNA mRNA upstream 69438 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
CI01000012_09894361_09922003.mRNA mRNA upstream 101219 9893656 ~ 9922443 (-) True CI01000012_09894361_09922003
CI01000012_09926268_09941904.mRNA mRNA upstream 133636 9926073 ~ 9942394 (-) True CI01000012_09926268_09941904
CI01000012_09974294_09974754.mRNA mRNA upstream 180902 9973339 ~ 9975056 (-) True CI01000012_09974294_09974754
TU85530 other downstream 211723 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 211771 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 385727 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 704206 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 714238 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 819478 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 819478 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2256607 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2286499 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2286499 12080546 ~ 12083845 (-) True G77017

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011931 True 3427 mRNA 0.45 4 NC_007124.7 29462249 ~ 29467558 (+)
bowfin (Amia calva) AMCG00002946 True 3504 mRNA 0.47 7 CM030139.1 7412109 ~ 7425081 (+)