RNA id: AMCG00002946


Basic Information

Item Value
RNA id AMCG00002946
length 3504
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00002946
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7412109 ~ 7425081 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTACCTCTGGTTTGGGGTTCTTGTCCAACTCAGTGTAGCTGCTTTTATCACAACCTCAGTGATGGATCTAAAGCAAGGAGTGTCCTTTGCAATGACCCAGAGATCTCTCTGGTTCCAGCCAACTTCCCCACCGACACCTCCAAGCTCCGTATTGAGAAGACGGCCATCAAGAGAATCCCCAGCGAAGCCTTTCATTACCTCTCCAACCTGGAGTTTCTCTGGATGTCCTTTAACTCCTTatccacactgaacatggacagTTTCCGTGGGTTGTACAGCCTTGATGAACTCAGACTAGATGGCAATGCCCTCACTTCTTTTCCTTGGGAGGCCATTGTTGACATGCCCAGCCTGCGGCTACTCGATTTGCACAACAATCAAATCACTTCAGTCCCGACTGAGGCAACGGTGTACATCAAAAACCTGACCTACCTGGATCTATCCAGTAACAACCTGGCCACCATACCTTCAGAAGTCATGGCGACGTGGCTGACGGTGAGACCCACTCAAGATGCCTACATCGAGAATTCCAAAATGATTCTAGGTCTTCATGACAACCCTTGGCTTTGTGACTGCCGCCTGTATGACCTGGTGCAGTTTCTGAAGTCTCCGTCGTCTGCAGTCGCTTTCATCGATACCAGGCTCAAGTGCTCGGACCCAGAGAGTCTCTCTGGTGTACTGTTCAGCGATGCTGAGCTGAGGAAATGCCAGATGCCAACCATTCACACTGCGGTAGCTCGGGTTCGGAGTGCTGTCGGGAACAACGTCCTGCTCCGGTGTGGGACCATTGGAGTACCAATTCCAGATCTCATGTGGAGGCGAGCAGATGGGAAACAAATGAATGGCACAGTTCAACAGGAGGTGTCAAAAGAGGGAATCACTTGGTCCATACTGAGTGTACCTGCAGTCTCCCACCGTGACTCTGGAAAATATGTTTGCAAAGCAACAAATTTTGCAGGGAGCGCTGATGCTGTCATTTCTCTCATTATAACGGACATTGTCAAGTCAGACAATCAAACTGGTAACCCAAAGAGACCCAGAGGAAGAAAGCCAAACGGAGTGGGAAAGGCAGCATATCAGGAAAAACTCGTGGCTAGGTATGTCGTTCCAACAACTACTACCCCAACACCAGACGCTGACCCGGTGGGTTATACTGGACAATATCCAGAACTGGAAAATTACAGCATCTCTGACAGTGGAACAAATGGACAAACATCCAATCCACTCAGCAGCAATGGCTTACTGGAAGGGGACAGAACAAATCTCAGCAATTTAGCAGCGAACACCTCCTCACTTCAGCAGGAGCCAGAACGTGTGGTTAGATCTGTGAAAGTGATCGGGGACACTGACCACACTGTCTCCCTGACATGGAGGGCCCCCACGGCTAAAAACACCACCATGTTTAGTGTCCTGTATGCGAtctttggagagagagaaatgcgcAGAATTAACGTTGATCCGGGCAAGAACAGGATCACCATCGAGGGACTGATGCCAAAGACAAAGTACATTGCCTGCGTGTGCGTCAAAGGACTGATCCCCAAAAAAGAGCAGTGTGTAATCTTCTCAACAGATGAGGCCGCCAGCGCTAATGGAACCCAAAAGCTCATTAATGTTGTTGTAATCACTGTTGCCTGTGTAATTGCTGTCCCCCTGACACTGATAGTCTGTTGTGGGGCACTGAAAAGGCGCTGCAAGAAACTGCTTGGGAGAAAGTCAAAAGACATCCAAGACTCTTATGTCACATTTGAAACTCTGTCCCCAGGGCCAAAAGCAAAGGGTCTAGAGGGAGAATACCTGACCAGGCTCAATCCAGAAGAGTCTAACCGACTCCTCTCAGCCAGATCAAGTGTAGACTCAGAAGCCACAGCTAAGATTGAAGGACAGCCAAATGAaaatgacagttttgggagATCTTTACTTTGCATGGCCACCGCCCTAAGAAGAATCCCTGAAAACATCCCGCAAGATTTCAGAAAAATCCGAATTGAAAAATGTCACCTTACAGAGTTACCCCGTGGGTCGTTTTCTACGATTAGTGCCTTGGAATATCTCTGgcttaattttaacaatataacTGTTATGAATATAAGGAGCCTTGAGGGATTAAAGAACTTGACTGAGCTAAGACTGCAGGGGAACAATTTGCGTTCAGTACCCTGGACAGCGTTTCAGGATACATCTGTGCTAAAAATCTTGGATTTGAAACACAACCGACTAGACGTGCTCCCAGAATACGCACTAAGACATTTGCCAGGCCTGACCTACTTAGACTTATCCTTCAATCAGCTTACAGTTATATCCAAAGATGTCTTTCTGAACTGGCCTCTCtaccacacagcacagcaacagGGAGGAAAACAGGAGCGCTTGGCAAACGTTGTCCTCGCTCTGCATGACAATCCGTGGATTTGTGACTGTCGTCTGAAAGGCTTTGTTCAGTTCATTAGATCTGTTACCCCAcctatcattttaatgaattctTACTTGACCTGCTCAGGCCCAAAATTCAGGGCAGGCAAGTTTTTTCACGAAGTTGAATTGAATAGTTGCATGAAGCCAGAGGCCACTGCCCCCAATACAAACCTTACACTGCCATTGGGGGTGAACATTTCTCTTACATGCTTGGCTAAGGCAAGGCCGGACCCTGCAGTGTGGTGGACATATGGTCTGAAGATTGTAAGAGGATTCAATGAGACAAGAACACGGATTAATGAAGATACCATCAAGTCTGAACTGACGATCCCGTCATTAAGTCTACTGGACAGAGGGACATACACCTGTATTGCCACTAATTTTATTGGGAACTCCAATGTCACCATATTTGTAAACGTCACTGCCCCGAATACATCATTTGCACTTTCTCCATTATATCCTTTATCGTCATCGTCAGTGGAAGAGAACATTTACATAGACATCCGTATTGCCAAACAGACAGTCTATGGGATCACTCTTGAATGGTACGCCGCCACAGAAAACCCAGCGGAAAGCTGGTACACCATACACTTCGGCAAATACGACAATGccagaaaagaaacaatctatATAGGCCCAGGAATCAACAGCTATTCGGTCACAGATTTGCTGCCAGCTACAAAGTACGAAGTGtgcattactttaaaaaatcaGCCTCCCAGAAGAGGtcaatgtgttgtgtttgtgacCGGCAGTGACATCAGTGAACTTGAGCAGAGAGAAAAGCTGATTCACATCGTGGTTATTGTGTGTGCCATGGTGCTGGCAGTGCCCGCAGGAATGTATGCATGCACCACAGAAACCAAGTTCAGCTGCTTTGAACGATGCAGTGAAATATGCAAAAGGCGGCGGCTTGCAGAGAAGACCCTCAAATCCAGCGAAAGACAGGGCACATTTGATAGTTTACAAGCAGCGAGTGATGAAGGGCTCTGTAGAGACTCTAGTGATGAcaaaagaagaaggaggaggtcAGAGGACAAAACACAGAAGGCCAGAGCTGAACAAAGGAACAATGCAGAGCTGTAC

Function

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175654 lncRNA upstream 215012 7196878 ~ 7197097 (+) True G139667
TU175640 lncRNA upstream 259370 7152537 ~ 7152739 (+) True G139656
TU175612 lncRNA upstream 345735 7062523 ~ 7066374 (+) True G139633
TU175611 lncRNA upstream 346644 7062523 ~ 7065465 (+) False G139633
TU175538 lncRNA upstream 988941 6420166 ~ 6423168 (+) True G139572
TU175809 lncRNA downstream 484268 7909349 ~ 7910999 (+) False AMCG00002960
TU175856 lncRNA downstream 528045 7953126 ~ 7953340 (+) True G139827
TU175863 lncRNA downstream 573132 7998213 ~ 7999259 (+) True G139832
TU175867 lncRNA downstream 577721 8002802 ~ 8003057 (+) True G139836
TU175868 lncRNA downstream 578234 8003315 ~ 8003645 (+) True G139837
AMCG00002942 mRNA upstream 65161 7313942 ~ 7346948 (+) True AMCG00002942
AMCG00002944 mRNA upstream 101185 7271927 ~ 7310924 (+) True AMCG00002944
AMCG00002943 mRNA upstream 144231 7225789 ~ 7267878 (+) True AMCG00002943
AMCG00002940 mRNA upstream 222304 7166518 ~ 7189805 (+) True AMCG00002940
AMCG00002937 mRNA upstream 259945 7132176 ~ 7152164 (+) True AMCG00002937
AMCG00002949 mRNA downstream 64290 7489371 ~ 7500590 (+) True AMCG00002949
AMCG00002952 mRNA downstream 270278 7695359 ~ 7733537 (+) True AMCG00002952
AMCG00002955 mRNA downstream 387428 7812509 ~ 7821463 (+) True AMCG00002955
AMCG00002959 mRNA downstream 403010 7828091 ~ 7829718 (+) True AMCG00002959
AMCG00002953 mRNA downstream 418463 7843544 ~ 7845870 (+) True AMCG00002953
TU175723 other upstream 32622 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 338573 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1258989 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2313365 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 3382185 4029524 ~ 4029924 (+) True G138941
TU175799 other downstream 498101 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 612496 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 1876531 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1900407 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 2353169 9778250 ~ 9780452 (+) True G140189

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011931 True 3427 mRNA 0.45 4 NC_007124.7 29462249 ~ 29467558 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_09789066_09792437.mRNA True 3303 mRNA 0.45 4 CI01000012 9787695 ~ 9792437 (-)