RNA id: TU175612


Basic Information

Item Value
RNA id TU175612
length 2597
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G139633
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7062523 ~ 7066374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAattctatgtttttttaattagaaacatacatgtaattttttattttatttttttacatttttgccaAAGCATGAGAAAAGCAACATATCCTTACTGGAGCATTTAACATGCTATATGCATGGTTTATATTAAAATCCCATACCAATAAGGATTCAATCATTTTACTGAACAAATCATACACCTAAAGTAAACAATGGCTTGAAATAAACCAGTAAGAGTTTTTGAGAACACaaagaaaactgtaataaactccttttataaataacaatcattcattaaattCCACAAACTTGTCTTTTCGGATACAGTAATTCAACTAAACCTGTATGAAGAGGTACCCATATTGGCTCATTATCTATCCAACACTATGTACATTGTCGTGTTTTATACTGCCTTTTCAAATGCTGGTACCTGATGTGAAGCCGATGAGTTTTGAAAAGAAGGGTGCAATATTTAAGCTCAACATGCTGTCCAGTAATGAGCAGGATTAGCCATGACTGCCTAATGgttactgaaaagaaaatacacagtatACATTTAAGGCcacagtttcttgttttgtttttttacttagtttttgagaaagaaaaccccttattcacaaaaatacactttttcacaaatcaatcaaaatatgtaatttgctgTCATGTGTAGAGCATAACACAGTAGCAATTCAATGACTCTAccatacacaaaaaacaacaatgtaccagtttagatttaaaaaaaggtctGTAATAAATGACAGATAATTACAGAAATATAGTATGTCAGTAATTATATTGTAGTGTAACTGAACATTTATTACACACAACTGACCAATAATGCAATAAAGATTAAAGCCCTGAAATACATTAAGACCCAAAACATGAACTGTCGATTGCCACGATCTGACTGGTTAACAGCCAATTGTAAAGTGAAATACAAACCAACCAATCATTGatacagtatttacattttaaaggaggCTAGATGTACGCTGACCCACTTTGCTTCACAactcaacaacaacatcatGCAGTTATTCCTGACAGTCTGCATTTTTAGGAAACAATGTCTAACAATAGACTTATATTCAGCTAGCTGGGTTTGAAAAGCATACGTCGCTTTTATTGTTGTAGTTTTCAATCATTTTACAGACTAACGTACAGTATAGAGCTGTTGTGTCAAGGTTATGATGATCACCACTACAGAAAAATTGTACCAATAGTATGATCTCCCATAAATCATTCACATTCACCATCTTATACCACTGGATCTTCTTAATCCACTATAATTGGCTGCCCAGGTgctttttaaacagattaatagattttgttttgcatcatCATTCATACCTTTCCATAATTATAAGGAGAGTGAATTTACTTAAATACTCAAGAAAGCAAattctgcaaattgttctgAATGACGCTAGGGCAGCCAAATGGAAAACGTTGGATTGAGAAgattcagtaaaacaaagtggTCGGATCAAATGGTTCAATGCCAAATGGGCTGACAAGAAACGGGACATACTGCCTTATTTTAgcagctgcaaaataaataaataaaatacattcagtatttaaataaattgggTCTGTACAGGTAGCAGATAGAACTTTTACTGTCAGTGAAATCTAGACATTCTGCTCCTCCATTTTTAGATAAAGGGAAGATACATTTTGTGGAAACTTAATAGAAAAAATGTCAATTGAGAATAACGCTCAAacttctttaaaaacatttttcgTTCACATGGTTTACTGGTTACAGTTCACAGTGGTTTGCAAAAATTCTTTCCTCAGCTATGAATGCAAttaatctgaaacaaaacacttaagAAGCCCCTCTTTGGAGAATTATGAAGACAGACCCGTTTTGAAAGCAGCTAAACAGACTGATACCAATGCCAAGACTACAGGTGACATTCCCatttttgattaaacaaataaatcaaacttcACAGATTAAGAGAAACAATgatgtgctacggtactgtaaATAGATCTACATTAGGCAGATACCAACCAAATATGTACACATTAGCACAGAGGGTCCTTGCAATTAGGTTTCAATCAgatttatacatctacaagcaaaCAATAGTGCATCTCAAGCAGCTTTCTTGGGAAGCGCATTTGTGATTTTTCAAGCTTCCTTTCTCTTCACGATGAGAGGACCAACGTTATCTCCGGTTTCTTCATTGTGCTTTGTGTGAGAACCATCACACAATGGGAACTTTAGACCTCCAGCATCGGCAGTATACTGCCTTCTCTCCCAGGTCCTCGATGTCGAAGGCATGCACCACCTTCGGGTTGTCCTTCTGGATATCTAGGTTGACCCTGGCCTTGCAGCACTTATCCTTGGAGAAAAAGGTCTTATAGGCCAGGAAACCAATAGCTGCGGTCCCAGCGGCCAGAGAGACGGCTGCTAACAGCTCAGCTGGGGAGGACTTTGGACAGCGTCTTGCAGCTCATGTCTGCTCCTATGGTGTCCCAGCGCTCCTCGCCGTCTCCTTATCATAAGGTCAGCAGCGTCTAAAACATCCGCAGCGCCGCGCAGCCGGTCACATGACCCACCCTGTGACGCGGGCATGACGTAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175538 lncRNA upstream 639355 6420166 ~ 6423168 (+) True G139572
TU175539 lncRNA upstream 643725 6418438 ~ 6418798 (+) True G139573
TU175484 lncRNA upstream 751253 6297734 ~ 6311270 (+) True G139531
TU175448 lncRNA upstream 859464 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 861053 6201203 ~ 6201470 (+) True G139506
TU175640 lncRNA downstream 86163 7152537 ~ 7152739 (+) True G139656
TU175654 lncRNA downstream 130504 7196878 ~ 7197097 (+) True G139667
TU175809 lncRNA downstream 842975 7909349 ~ 7910999 (+) False AMCG00002960
TU175856 lncRNA downstream 886752 7953126 ~ 7953340 (+) True G139827
TU175863 lncRNA downstream 931839 7998213 ~ 7999259 (+) True G139832
AMCG00002931 mRNA upstream 481493 6578983 ~ 6581030 (+) True AMCG00002931
AMCG00002929 mRNA upstream 487252 6556470 ~ 6575271 (+) True AMCG00002929
AMCG00002930 mRNA upstream 598247 6463713 ~ 6464276 (+) True AMCG00002930
AMCG00002928 mRNA upstream 607382 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002926 mRNA upstream 643140 6410426 ~ 6419383 (+) True AMCG00002926
AMCG00002939 mRNA downstream 481 7066855 ~ 7073538 (+) False AMCG00002939
AMCG00002938 mRNA downstream 8900 7075274 ~ 7077227 (+) True AMCG00002938
AMCG00002937 mRNA downstream 65802 7132176 ~ 7152164 (+) True AMCG00002937
AMCG00002940 mRNA downstream 100144 7166518 ~ 7189805 (+) True AMCG00002940
AMCG00002943 mRNA downstream 159415 7225789 ~ 7267878 (+) True AMCG00002943
TU175429 other upstream 909403 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1963779 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 3032599 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 3466415 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3946442 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 569 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 310313 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 856808 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 971203 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2235238 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile