RNA id: TU175484


Basic Information

Item Value
RNA id TU175484
length 1898
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G139531
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6297734 ~ 6311270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGACAAGAATGAGACTTTAATTGGTTTTAAGTGGAGTTTATAACACTAAGATAAAGGGTAGttaaacacatacaataacaaaCGGACATCTGATTTGTATGAGCATCATTATAACCTGTACAATTTCATACATTGTTGGTTGTGTATTCTCAGTGCATAGCATTACACACAGAGCAACTTTTGCACAGCACAATAGTATCCGAACAGGCTGAAATGGAATAAGGCTGTTTTACAGACTGAAAATATACCGAGTATACATACTCTACATAGAATGAAGTCCGAAACGGAGCGGACAGAGCAACAGGCCGCCCTGTCCAAGACTGCAGGTTCAGCCCCTTTGATTTAGTGCACAGTTCCACCCCTTCCATCTGCATGCaggacaaaatgttttttttttgtttttttttgtttgttttttttaaacagtatttaacaatttttttttcattatttatttttttaaactaaacaagAGGCACTTTGTGGCAACCACAGGCATTGTTAAAACATATTGCACAAATCTGCTAGAAACTAGTGACATGAAACTTGCACACCGGCACCCTTATGAAGATTTTAAAGCTGAAACTTAATTTTGATGCTGCCTGTGAACTCCGCCCAAGTTTTAGAACCCGTGCCACAGTCCAGGACCTCGAAGGCTGCCCggggagtttgtttttttctttatttttttcctcttcttcttgtTTCCAACTTAAGGTACTGTGGCAAATCTttacaaagtggggctacagatGTTTAGGGATGGCCTGAGGCCTAACAGTAAGCTCCTTAACAGTGATGCCCTTGAAtagtttcatacatttaaactgcTGAACATCCAAAGTAATAAGCATACGGTCCAGAAAGTCAAGGGAGAGAAGAAAGAATACCTGCAGAATGTCTTTACCAGAATATGAATACtgtcataaatatatttcattatttttttcgtaaaaaaaaaagtcaggacATTTTCAGTCGAAGTAATGCGTCCGATTCtatgggtggggtggggtgggggtgtatGGATACAAGATTAAGGTACACTAATGCCATTTTATTCCACCTCCAACATCAAATTGCTTGCAAGGcgttttggggggaaaaaacaaattatggaCCGCTGACTGAAACCCTGCAAAAACCTGTAACAGTGCAAAAGTCTAGTACAATGTTGCTCTTTAAATGTAGCTTTAAATAAGTACTTAAACTAGCTAGTCAGTGCTTGGGCAGAAAGGTAGATTTCCAAAGCAGTAGCAATGTAAGCATTGTCAACTTCAAGTAAGGCAAAGAATACCTCCCATAGGCTACCCctccaaataaaacacacaaacatcacaAATCAAAAAGGACAAGAAGCTTACTTTTGGCAGGTTTTCAGTGAGTTGATAAGATgtaaacaaaatcagaaaactTAAAAttcctacataaaaaaaaaaaaaagttaaatgggTTGGCTAAAGTatatctgctttaaaaaaataaataaaaccctccTTTCAATACCTAGGgaatatattctttatatataaaggCGATTTGAACAGCATGTGCAGTGGGTTAATGATGAGGGTGGAGCCTAAAATGTCAACAGTACAGTAAAGGCAGCTTACATCTCTACCCGCTGGGAATATTCCTGCCCAAGTTTTTGGTCTGGCCGATTGCAATCCACCAGCCAGGTGTTAGGACTTAATTTggcatgcttaaaaaaaaaaaaaaaaaaaagttttctatACTTAAATATCCTCACAAAAGGGCTTGTAGATTTCTTTTCTCTGAAGCAAGCTGGAGACTTTCATAAAAAATCTGTAGCTGCAGTATTGCCCATTCCCGATGGAATGACACAGGTTTAAAAATGgagttggtggggggggggagaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175448 lncRNA upstream 94675 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 96264 6201203 ~ 6201470 (+) True G139506
TU175446 lncRNA upstream 97878 6199359 ~ 6199856 (+) True G139505
TU175445 lncRNA upstream 99232 6198270 ~ 6198502 (+) True G139504
TU175436 lncRNA upstream 100704 6194611 ~ 6197030 (+) True G139498
TU175539 lncRNA downstream 107168 6418438 ~ 6418798 (+) True G139573
TU175538 lncRNA downstream 108896 6420166 ~ 6423168 (+) True G139572
TU175611 lncRNA downstream 751253 7062523 ~ 7065465 (+) False G139633
TU175612 lncRNA downstream 751253 7062523 ~ 7066374 (+) True G139633
TU175640 lncRNA downstream 841267 7152537 ~ 7152739 (+) True G139656
AMCG00002915 mRNA upstream 31134 6255170 ~ 6266600 (+) True AMCG00002915
AMCG00002918 mRNA upstream 63579 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002917 mRNA upstream 85163 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002916 mRNA upstream 104234 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002909 mRNA upstream 139167 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002921 mRNA downstream 8866 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002925 mRNA downstream 86187 6397457 ~ 6409095 (+) True AMCG00002925
AMCG00002926 mRNA downstream 99156 6410426 ~ 6419383 (+) True AMCG00002926
AMCG00002928 mRNA downstream 143602 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002930 mRNA downstream 152443 6463713 ~ 6464276 (+) True AMCG00002930
TU175429 other upstream 144614 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1198990 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2267810 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2701626 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3181653 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 755673 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1065417 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1611912 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1726307 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2990342 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile